Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0343 ATGGTGCCAACGCCGAGTCAAAAAGAAAGAGCACTTGCGGCATGTCGTGCTATGTCAAGTCTTGGAATTGATGATTTGAGAGTGAAATCAGTGTTAAAGAAACTCCTCAAAGTGTATGAAAAAAATTGGGAACTTATTGAGGCAGAGAACTATAGAGTTCTAGCAGATGCTATATTTGAGGATGACGATAAAATGGTGCCCGAACTGAAAAAGAAAAGCCAGGCAGCCAATGTACATAACGCTCGTCATTCTTTGTCTTCTTCCCTTCAAAACAACCAGGAAGCAGAGACAGAGTGTGAAGAGGCTCAGATGCATATTGAAACAGCCCGACCTTTGAAAAGGTTGCGATTACAAGGCCAAGAGAGTCAGCCTTTGCATCCTCTGGCTAACAGTGCCCCCAGCCCTCCATCAAAAAGACTTAAATTAGATGATAATGCATCTTCTAGGAAGAAGCTTCAAAACAAACCAGTGTCTTCTGATGGGAATCCAAGGATTGAAGCATGTTCACTTCCACCACAAGATTGCATTGTTGATAAGGGAAAGCAACCTGCATCACCCGAAGTTTATCATAGAGGAAGAAGACTTACATCTGAAAGAGTATCCCAATCTATACCGTCTAGAGAGCCAACAGTTGAACCTGGGAGATTTCTATTGCCAAACAACCAAATGCCCCATACTCAGACACCAATCATACCCAAGGACGAGCCTATTGATGAAATGCCTGATTACGAGATGCCCATTGCAGTGATTCCTCCTGAATCATCAAGTGTAAGGAACTGGTCAATTAAGAATGGTGTAGCTGGAAAACACAGTGGTCGTGCTACTGTGGCATCATCACAAAGCAGAGATGGAGTTGTAGATGAAGATGTTATTCGTACCTCAAATGGAGAAAGGACTTGTGATGTAGAGATAGCCTCATCAACTCTTGGAGAGGTAAAACTTTCTTTGAGCTGCAGCCCAGCTCTTTGGGGATCAGATTTTCATATGCCTAGTCAAGATCAACTTATAGAAATGATGGAGGATAAATGTCTGCAATCATATAAAATCACTGACCCAAATTTCTCTGTGAAGAATCTGTTGAGAGATATATGTGATTGCATGTTGGAATTCAGAAATGATAAGTCACAAGAGGGTTCTACGATAAGGTCCAGTGTTGATGTGTTGAAGGAACCACATGCACCTGACACACTGAGTGTGGTAGGAAATAAAGATTTGGACAGATCTTCTCACTTTTCAAACGGATCCATCAATGTTAAGTCTTCTGATGCTTTGGTTTCTCCCCGAAGTATCCTTCCTCTAGCCCACCCGAATGGTCTGAGTGATGCTGTACTGGTTTCCAAGATGGACGGAACAAATGATTTTTTGCAAAGTAATGTCAGAAAGGATCTGGAAGATCCTATGTCTCCAAATTCACAAAGTTTAGTGTTTGTTCCACAGCATCAGCTTACAGTTGGTGATATAAGGTCTTTTCATGATGCTAATGACCTTACAAAAGGAGAAGAAAATGTTGAAATTCCATGGGTGAACGAAACTACTAGTGATTTCGCACCATCTTTTAACTACATACCCCAAAACCTTGTGTTCCAAGATGCTTATGTTAATATTTCTCTATCACGTATTGGTGGTGAGGATTGTTGTTCAACTTGTATGGGCAATTGTGTCTTGTCTACTACCTGTGCTTGTGCAAATAAAACTGGTGGTAAATTTGCATACAATACTGAGGGCCTACTGAAGGAAGAATTCTTGGAAGAGTGCATTGCAATCAGTCGCAACCCTCAACAACATTTCTACTATTGCAAAAATTGTCCACTTGAAAGATCCAAGAATGATGGTTGTTTAGAACCGTGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGTTGTGGGAAACAGTGTGGAAATCGGGTTATCCAGCGAGGAATAACTTACAATTTGCAGGCATTTTTTACTTCAGAAGGAAAAGGATGGGGTCTTCGTACCTTAGAGGACCTGCCAAAAGGTGCATTTGTGTGCGAGTTTGTTGGAGAAATATTATCCATTAAAGAGTTGCATGAGAGGAGCATGAAATGCACTGAAAATGGGAAATATACATACCCAGTTCTACTGGATGCAAATTGGGATTCAGGATATGTGAAGGACGAAGAAGCTTTATGCTTGGATGCAGCTTCTTTTGGAAACACTGCTAGGTTTATCAATCACAGATGTTCTGATGCAAACTTGATTGAGATCCCTGTTGAAGTTGAGGATCCTGGTCATTATTACTATCACTTTGCCTTTTTCACTTCAAGAAAAATAGCAGCGCAGGAGGAGCTAACATGGGATTATGGCATTGACTTTGATGACCATGATCATCCTGTCAAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAACATGAAGAGATCAAGCAGATCTTTTAGATCTTCGTCAATTGCAGGATGA 2466 0.41 MVPTPSQKERALAACRAMSSLGIDDLRVKSVLKKLLKVYEKNWELIEAENYRVLADAIFEDDDKMVPELKKKSQAANVHNARHSLSSSLQNNQEAETECEEAQMHIETARPLKRLRLQGQESQPLHPLANSAPSPPSKRLKLDDNASSRKKLQNKPVSSDGNPRIEACSLPPQDCIVDKGKQPASPEVYHRGRRLTSERVSQSIPSREPTVEPGRFLLPNNQMPHTQTPIIPKDEPIDEMPDYEMPIAVIPPESSSVRNWSIKNGVAGKHSGRATVASSQSRDGVVDEDVIRTSNGERTCDVEIASSTLGEVKLSLSCSPALWGSDFHMPSQDQLIEMMEDKCLQSYKITDPNFSVKNLLRDICDCMLEFRNDKSQEGSTIRSSVDVLKEPHAPDTLSVVGNKDLDRSSHFSNGSINVKSSDALVSPRSILPLAHPNGLSDAVLVSKMDGTNDFLQSNVRKDLEDPMSPNSQSLVFVPQHQLTVGDIRSFHDANDLTKGEENVEIPWVNETTSDFAPSFNYIPQNLVFQDAYVNISLSRIGGEDCCSTCMGNCVLSTTCACANKTGGKFAYNTEGLLKEEFLEECIAISRNPQQHFYYCKNCPLERSKNDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITYNLQAFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILSIKELHERSMKCTENGKYTYPVLLDANWDSGYVKDEEALCLDAASFGNTARFINHRCSDANLIEIPVEVEDPGHYYYHFAFFTSRKIAAQEELTWDYGIDFDDHDHPVKLFQCRCGSKFCRNMKRSSRSFRSSSIAG* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0343 821 Gene3D - 2 64 IPR043017 -
Gso10g0343 821 Coils Coil 85 105 - -
Gso10g0343 821 Pfam SET domain 661 782 IPR001214 GO:0005515
Gso10g0343 821 Pfam Ubiquitin-binding WIYLD domain 6 64 IPR018848 GO:0018024
Gso10g0343 821 ProSiteProfiles Pre-SET domain profile. 541 646 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso10g0343 821 SUPERFAMILY SET domain 488 790 IPR046341 -
Gso10g0343 821 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 9 312 - -
Gso10g0343 821 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 380 818 - -
Gso10g0343 821 Pfam Pre-SET motif 497 641 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso10g0343 821 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 821 IPR025776 -
Gso10g0343 821 SMART set_7 649 788 IPR001214 GO:0005515
Gso10g0343 821 SMART preset_2 493 633 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso10g0343 821 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 380 818 - -
Gso10g0343 821 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 9 312 - -
Gso10g0343 821 CDD SET_SETDB-like 517 782 - -
Gso10g0343 821 MobiDBLite consensus disorder prediction 123 231 - -
Gso10g0343 821 Gene3D SET domain 484 808 IPR046341 -
Gso10g0343 821 ProSiteProfiles SET domain profile. 649 782 IPR001214 GO:0005515
Gso10g0343 821 MobiDBLite consensus disorder prediction 72 102 - -
Gso10g0343 821 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0343 Gso-Chr10 3642874 3650219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0343 625 807 C2H2 Transcription Factor Family AT2G23740 40.212 3.48e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso10g0343 Pre-SET 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0343 - - gmx:100787369 1649.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2081 19 49353117 49354667 Gso10g0343 10 3642874 3650219 PCT
Gso3g2124 3 46526207 46531247 Gso10g0343 10 3642874 3650219 PCT
Gso10g0343 10 3642874 3650219 Gso19g1396 19 42790518 42799390 PCT
Gso10g0343 10 3642874 3650219 Gso3g1403 3 39974321 39981955 PCT