Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0341 ATGTCGAAGCGTGGTCGTGGTGGTTCGGCGGGGAACAAGTTCCGCATGTCGCTGGGTCTTCCAGTGGCGGCGACGGTGAACTGCGCCGACAACACGGGGGCGAAGAACCTCTACATCATTTCGGTGAAAGGGATCAAAGGCCGTTTGAACCGTCTTCCCTCGGCCTGCGTTGGCGACATGGTGATGGCCACCGTGAAGAAGGGAAAACCCGATCTGAGGAAGAAGGTCTTGCCAGCTGTCATCGTTCGCCAGCGCAAGCCATGGCGCCGAAAGGACGGCGTCTACATGTACTTCGAAGATAATGCTGGTGTTATTGTCAATCCCAAGGGAGAAATGAAAGGTTCTGCTATCACTGGTCCCATTGGAAAAGAGTGTGCTGATTTGTGGCCTAGGATTGCAAGTGCAGCTAACGCCATCGTTTGA 423 0.5461 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0341 140 SUPERFAMILY Ribosomal protein L14 11 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Gso10g0341 140 Pfam Ribosomal protein L14p/L23e 22 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gso10g0341 140 Hamap 50S ribosomal protein L14 [rplN]. 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gso10g0341 140 PANTHER 60S RIBOSOMAL PROTEIN L23 1 140 - -
Gso10g0341 140 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gso10g0341 140 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
Gso10g0341 140 Gene3D Ribosomal protein L14 1 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Gso10g0341 140 SMART Ribosomal_L14_2 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0341 Gso-Chr10 3636586 3637969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0341 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 97.857 7.48e-99 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0341 K02894 - tcc:18613077 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1395 19 42787350 42788621 Gso10g0341 10 3636586 3637969 PCT
Gso3g1402 3 39970890 39972152 Gso10g0341 10 3636586 3637969 PCT
Gso10g0341 10 3636586 3637969 Gso19g1395 19 42787350 42788621 PCT
Gso10g0341 10 3636586 3637969 Gso3g1402 3 39970890 39972152 PCT