Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0340 ATGGAAGCACATCCTACTTTCTCCATTGAAAGTTCAAAGCAACTCAATAACATGGGGATGTCTGGAGCACTTTCTTCATCCTTGTCAATCCTTCCAATACCCCCAGAAGAGTTGTTTCCCAAGCTGCCTGAATCACAGCTGGATTTTGTAGAACAAGAGCTTATGATAAGACCTTTTACTCATTCAAGTTATTTGAATTCCGGTGGAGTAATTGGGCATATTTTTTCGTCTTCCCCTGGATATTCAACTGATCTTCATCACTCAACTCTTTCATCTGCTGAAAAACATTCTACTAATGCTCATTTGATTTCACAATCATCAACTAACATCACCCAATTTCCATTATCATATTCTTCAAATACTGGACCACCAGCTTCAGCAACACCAAGTCATTATTCCAAAGAAAACAGTGTTTCCTGGCATACAGATTCCCTGCCAGGCTTTCTGGATTTTCCTGAAAATGGCTCTATTGATAATAATCCGGTAGAAAGTAGTGCCTGCCCTATAATGGCATCTGAGGAGTATTCTAAGCAAAATGATTGGCAGGAGTGGGCTGAGAGGCTAATCAGTGATGATGGCACATTGACTTCTAATTGGAATGACCTTCTTGCTGACAACATTCAAGATCTTGAGCCAAAGATTCCAGGACATCAATCCCAAGGTCATCAACAACTTCCTGCTTCATATGGAGAAAATTGCGCTGGTGCTGCCCTCTCTTCCTCAGCAAATTCTGCTCCTGCTAAGTCACGAATGCGTTGGACACCAGAACTTCATGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGGGGGAGTGAAAAAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCATTTGCAGAAATACAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGAGTTATGGACAAAAAAACAAGTTCGGTTGAAGAGATGTCATCTCTAGATTTGAGAACTGGTATTGAGATCACTGAAGCTCTACGATTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAACCTACAGTTGCGAATAGAAGAACAAGGTAGATGCCTCCAGATGATGTTTGAGAAGCAATGTAAACCTGGAACTGAAACGTTCAAGGCACCATCATTTACCACCATTGAGACTCCATTTGGGATGTCTTCAAATGCTACGAAAGATTCCCTTTCCAAAAATGAAATGGAAGCATCACTAGTACTGGACCATTGCAGTTCAGGACCTGATCAGGTTAATGGCAGTACCAGAGTTGAGGAAGGCTCATTGGAAAAGTGTGGGAAGCCTGATTCTCCCAAAACTCAACATGCTATAGCTAGTGAAGATAGTGCTCAAGCCCCAAAGCGTCAAAGAACTGAGTAA 1413 0.4197 MEAHPTFSIESSKQLNNMGMSGALSSSLSILPIPPEELFPKLPESQLDFVEQELMIRPFTHSSYLNSGGVIGHIFSSSPGYSTDLHHSTLSSAEKHSTNAHLISQSSTNITQFPLSYSSNTGPPASATPSHYSKENSVSWHTDSLPGFLDFPENGSIDNNPVESSACPIMASEEYSKQNDWQEWAERLISDDGTLTSNWNDLLADNIQDLEPKIPGHQSQGHQQLPASYGENCAGAALSSSANSAPAKSRMRWTPELHEAFVEAVNQLGGSEKATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVMDKKTSSVEEMSSLDLRTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRCLQMMFEKQCKPGTETFKAPSFTTIETPFGMSSNATKDSLSKNEMEASLVLDHCSSGPDQVNGSTRVEEGSLEKCGKPDSPKTQHAIASEDSAQAPKRQRTE* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0340 470 Pfam Myb-like DNA-binding domain 250 301 IPR001005 -
Gso10g0340 470 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 23 468 IPR044848 GO:0003700
Gso10g0340 470 Gene3D - 247 306 - -
Gso10g0340 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 305 IPR017930 -
Gso10g0340 470 Coils Coil 336 356 - -
Gso10g0340 470 MobiDBLite consensus disorder prediction 421 470 - -
Gso10g0340 470 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 23 468 - -
Gso10g0340 470 SUPERFAMILY Homeodomain-like 246 302 IPR009057 -
Gso10g0340 470 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 248 302 IPR006447 GO:0003677
Gso10g0340 470 Pfam MYB-CC type transfactor, LHEQLE motif 333 379 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0340 Gso-Chr10 3617827 3624380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0340 53 377 G2-like Transcription Factor Family AT4G28610 54.303 2.13e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso10g0340 Myb_DNA-binding 9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0340 - - gmx:100808743 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1393 19 42768804 42776355 Gso10g0340 10 3617827 3624380 PCT
Gso3g1400 3 39952175 39958630 Gso10g0340 10 3617827 3624380 PCT
Gso19g2083 19 49363648 49367746 Gso10g0340 10 3617827 3624380 PCT
Gso3g2126 3 46535323 46539637 Gso10g0340 10 3617827 3624380 PCT
Gso10g0340 10 3617827 3624380 Gso19g1393 19 42768804 42776355 PCT
Gso10g0340 10 3617827 3624380 Gso3g1400 3 39952175 39958630 PCT