Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0336 ATGAAGTGCCTACGCTCCGGGGAGTCGTTGGGAGGAGCTGACGATGAAGTGTTGTTTCCTTCGTCATCTGGATCTCTTGCAAGTGCAATCAAGGACTTTTCAGCTAGTGAAAATTCTTGCCTGGCTGAACAGTTTGATAAGAAGCCGGACACTGGCAACATAGAAGAAGCTGAATCATCCTTACGTGAGAGTGGCATCTTGAACTATGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGGAATATAGTAGCTGCTTTGCATGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATCGCCCTTTCCCGAAGCAGAGAACGCCGCAAGAGACATTCTCAAAATCATGCTGAACCACAAATGTCTATACATTCTGTTGGCTTACTATTGGAAGCTGTATTCCTAAAAGCAAAATCTTTGCAGGTTCTTGAAAGGTTTAAAGAGGCTGCCCAATCTTGCAAAGTTATTCTGGATATAGTGGAGTCTTCATTGCCTGAAGGCATGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCCTCAACAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAATCTATTTTGTCTTACCGACGAGCACTCCTTCATCATTGGAATCTTGATGCAGAGACTATAGCAAAGATTCAGAAAGAATTCGTTGTTTTTCTTCTTTATAGTGGAGGAGAAGCAACACCCCCTAATCTCCGTTCCCAAATGGATGGCTCATTTGTGCCTAGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTATTAAGAAAGGTCTCTCTGAATAGAATCGAGTGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCTGTTTCAGGCGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGCTTCCTGCGACTATCCATCGAAGTGAAAGGTACTATGCTCTAGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCCCTGGATCTTCTCAGAAAGTTGTTGAGGAGTAGAGAGGATCAACACCATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAACTCTACTCTTGCGGAAGAAGGAGTAAGCTTTGCTAAGCGAGTGCTTCAAAACTTGGATGGTAGATGTAATCAGCTAGAAAATCATGCCAATTTCTTTCTTGGTGTTTCACTTTCAGCACATTCGAAATTGGCTGCTTCTGATTCTGAGAGGCTTAAGAGACAATCTGAGGCACTTCACGCCCTAGAAACTGCTGGCAGAATGAGAAACCCCCTTGTACTATACCATCTAAGTTTAGAATACGCAGAACAAAGGAAGTTGGATGCTGCATTTTATTATGCAAAGTGCTTTCTAAAACTGGAAGGTGGTTCTAATGTTAAAGGATGGTTATTGTTAGCCCGGATATTGTCTGCTCAAAAACAGTTTTTGGATGCTGAATCTATTGTCAATACTGCTTTGGATCAAACTGGAAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAATGCCATTGAGACATATACGCAGTTACTTGCTGTTCTTCAAATTCAGAGTAAAGGATTTGGTTCTGGGAAGAAGCTATATAAGGACAATAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATATTGCTTATGTATATATCAGTCTTTTACAGTGGCACGATGCAGAGGTGTGTCTTTCAAAATCCGAGGCCATCAAACCACTCTCTGCTTCCAGATGTCATGCAATAGGCATAGTGTACGAAGCAAAAGGTCAATACAAAGAGGCTCTAAAAGCTTTTGGTGATGCCTTGGACATTGATCCTGGCCATGTCCTTAGCATAATCTCCACTGCTGTAGTTCTTAAACGATGCAGTAATAAATCAAATCCAGCAGTTAAAAGCTTTCTGATGGATGCGCTACGGCACGACAGATTCAACGCTTCTGCTTGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGGTACAGCATCATCATTAGTTGAAGCTGCCGAATGTTTTCAAGCAGCACACTTTCTTGAAGAATCTGCACCTGTTGAACCTTTCAGATGA 2145 0.4172 MKCLRSGESLGGADDEVLFPSSSGSLASAIKDFSASENSCLAEQFDKKPDTGNIEEAESSLRESGILNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRSRERRKRHSQNHAEPQMSIHSVGLLLEAVFLKAKSLQVLERFKEAAQSCKVILDIVESSLPEGMPDNFGAECKLQETLNKAVELLPELWKLADCPRESILSYRRALLHHWNLDAETIAKIQKEFVVFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPATIHRSERYYALALCYYGAGKDLVALDLLRKLLRSREDQHHVPGLLMASKICCENSTLAEEGVSFAKRVLQNLDGRCNQLENHANFFLGVSLSAHSKLAASDSERLKRQSEALHALETAGRMRNPLVLYHLSLEYAEQRKLDAAFYYAKCFLKLEGGSNVKGWLLLARILSAQKQFLDAESIVNTALDQTGKWDQGDLLRTKAKLQIAQGQLRNAIETYTQLLAVLQIQSKGFGSGKKLYKDNRDRARNLEVEIWHDIAYVYISLLQWHDAEVCLSKSEAIKPLSASRCHAIGIVYEAKGQYKEALKAFGDALDIDPGHVLSIISTAVVLKRCSNKSNPAVKSFLMDALRHDRFNASAWYNLGLLHKAEGTASSLVEAAECFQAAHFLEESAPVEPFR* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0336 714 Pfam Tetratricopeptide repeat 605 635 IPR013105 -
Gso10g0336 714 PANTHER PROTEIN NPGR2 1 714 - -
Gso10g0336 714 SUPERFAMILY TPR-like 421 537 IPR011990 GO:0005515
Gso10g0336 714 ProSiteProfiles TPR repeat profile. 602 635 IPR019734 GO:0005515
Gso10g0336 714 Gene3D Tetratricopeptide repeat domain 24 548 IPR011990 GO:0005515
Gso10g0336 714 SUPERFAMILY TPR-like 139 355 IPR011990 GO:0005515
Gso10g0336 714 SMART tpr_5 602 635 IPR019734 GO:0005515
Gso10g0336 714 SMART tpr_5 672 708 IPR019734 GO:0005515
Gso10g0336 714 SMART tpr_5 137 170 IPR019734 GO:0005515
Gso10g0336 714 SMART tpr_5 476 509 IPR019734 GO:0005515
Gso10g0336 714 SMART tpr_5 322 355 IPR019734 GO:0005515
Gso10g0336 714 SMART tpr_5 568 601 IPR019734 GO:0005515
Gso10g0336 714 SMART tpr_5 512 545 IPR019734 GO:0005515
Gso10g0336 714 Gene3D Tetratricopeptide repeat domain 549 710 IPR011990 GO:0005515
Gso10g0336 714 SUPERFAMILY TPR-like 513 686 IPR011990 GO:0005515
Gso10g0336 714 PANTHER PROTEIN NPG1 1 714 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0336 Gso-Chr10 3584396 3590379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0336 1 714 Calmodulin-binding Proteins AT4G28600 58.953 0.0 789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1385 19 42686132 42693513 Gso10g0336 10 3584396 3590379 PCT
Gso3g1391 3 39872787 39878342 Gso10g0336 10 3584396 3590379 PCT