Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0329 ATGGAGCATGTGATTGGTGGCAAGTTTAAATTGGGAAGGAAAATTGGTAGTGGGTCTTTTGGGGAGCTCTATTTAGCTGTCAATGTACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAACCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAACTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTTATCGACCTTCTTGGACCAAGTCTGGAAGATTTATTCAATTATTGTAATCGGAAGTTCACATTGAAGACAGTGTTAATGCTTGCGGATCAATTGATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCGGACAATTTTCTAATGGGTCTAGGACGAAAGGCAAATCAAGTGTATGCCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTACGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAAAGGAAGTCTTCCCTGGCAAGGACTGAAAGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACAAAGGTGTCAACTCCCATAGAGGTGCTCTGCAAATCATATCCGTCTGAGTTTGTATCATACTTCCGCTATTGCCGATCACTGCAGTTTGAGGACAAGCCAGATTATTCGTATTTAAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGGTACCAGTTTGATTACATTTTTGACTGGACTATGTTAAAGTATCCACAGATCAGTGGCAGCTCCAGAGGGAGGCATGTCACTGGCAAGGCAGCTATGCATGCAGGTCCACATGTACAAAAAGCAGAAAAGATCTCAGTTGGGAAAGAAATTCGAGAGAAATTTTCTGGTGCAGTTGAAGTGTTCTCCTGGAGGAACCCTGCAAATGCTAGTCCTCGTGGTGATCACACCAAACATAGAAGTTTTGAGGATGCACCAGTGCAAAAGGATTTGCACTATGCGCAACACAATTCCACTCGATATGGCAGCAGTTCAAGAAGAGCCATGATCTCATCGAACAGGCCAATATCCTCAGGTGACCATACTGGCAGGCAAACCATAACTGGGAGCCGTCCATCTGGTGCTCACAGAGTTCAACCAGTGTATGACACCAAACAAGCAACTTATACGCATGGTGGCTCTATAAGAGGCCGTGATGATCCTCTGCGGAACTTTGAGCTCCTCAATATCAGGAAGTAA 1359 0.4371 MEHVIGGKFKLGRKIGSGSFGELYLAVNVQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLKGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFRYCRSLQFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQISGSSRGRHVTGKAAMHAGPHVQKAEKISVGKEIREKFSGAVEVFSWRNPANASPRGDHTKHRSFEDAPVQKDLHYAQHNSTRYGSSSRRAMISSNRPISSGDHTGRQTITGSRPSGAHRVQPVYDTKQATYTHGGSIRGRDDPLRNFELLNIRK* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0329 452 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0329 452 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Gso10g0329 452 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 437 - -
Gso10g0329 452 PANTHER CASEIN KINASE-RELATED 1 437 - -
Gso10g0329 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gso10g0329 452 MobiDBLite consensus disorder prediction 372 413 - -
Gso10g0329 452 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gso10g0329 452 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso10g0329 452 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0329 452 MobiDBLite consensus disorder prediction 365 421 - -
Gso10g0329 452 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0329 452 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0329 Gso-Chr10 3527859 3535975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0329 5 219 EF-hand Containing Proteins AT3G50530 26.104 1.40e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso10g0329 Pkinase 2.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0329 K08960 - gmx:100783824 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1380 19 42636429 42643079 Gso10g0329 10 3527859 3535975 PCT
Gso3g1385 3 39819958 39825760 Gso10g0329 10 3527859 3535975 PCT
Gso10g0329 10 3527859 3535975 Gso19g1380 19 42636429 42643079 PCT
Gso10g0329 10 3527859 3535975 Gso3g1385 3 39819958 39825760 PCT