Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0328 ATGATGAAAGTGGGATTTGAGGTGGTTCATGCAAATTATAATTCAAACATGATTCGTCCACACATGCATGAAACATGGGATGATCACTACTCAAATAACATTACTACTTCCTTGCCATTTTCATCTCCAACAACCCCATCAAACCCTTATCCAAAGCCAGCAACAGAAAACAACCATTGCCTCAACATGGGGCAGAATAATGAACTCTGTGATTGGATGGAGGAACAAGTTAGCGACTTCACCAAACACCTTGTTGAAGACTTTCCAGAAACAACAACCACTTCTGATAACTTGCTTTCTAATAACCCAACAAGGGTTAACATTGCTTCCCATCACAACCTTAATGTTCCCTCACTACTTTCACCCAAATTCAGTCAAAGAAAACCCTCATGTTTATTTAGACCCCAGTTTGAGTCCTTCACCAATAATGACCCCCCAAACTTCAATCTTCACATTCAAACAAATACCTCAACTTTAGATCAAAGCCAACACAATGTTGTTTATGATCAAGGGTTGAGCCTAATAACCCTTCTAATGGAGTGTGCAGTGGCAATCTCAGTTGACAACCTAGGTGAGGCTCATAGGATGTTACTAGAGCTAACACAAGTGTCCTCACCCTACAAAGCATCATGTGCTGAACGTGTTGTTGCTTATTTTGCGAAGGCCATGACTAGCAGGGTGATGAATTCATGGCTTGGAGTGTGTTCCCCTTTGGTTGATCACAAAAGCATAAACTCATCATTCCAAGTGTTCAACAACATCTCCCCTTTCATCAAATTTGCTCACTTCACTTCGAACCAAGCAATTCTAGAAGCAGTGAGCCATTGTGACAGCATCCACATAATTGACTTGGACATCATGCAAGGGCTTCAATGGCCAGCTTTTTTCCACATCTTAGCCACAAGAATGGAGGGTAAACCACAGGTAACAATGACAGGTTTTGGAGCCTCAATGGAACTCCTTGTTGAAACAGGAAAACAGCTCACAAACTTTGCAAGAAGGCTTGGCATGTCACTGAAATTCCTCCCTATTGCAACAAAGATTGGTGAAGTAATTGATGTGTCCACGCTTCATGTGAAGCCTGGTGAGGCAGTGGCAGTGCACTGGCTTCAGCATTCACTGTATGATGCAACTGGACCTGATTGGAAAACATTGAGGCTCCTTGAGGAGTTGGAGCCAAGAATCATCACCTTGGTGGAGCAAGATGTGAACCATGGAGGAGGAGGGTCTTTCTTAGACCGTTTTGTTGCTTCCTTGCACTACTACTCCACCCTCTTTGATTCCCTTGGAGCATACTTGCACAATGATGATGAAAACCGGCACCGTGTCGAGCATGGCCTTCTCTCCAGAGAGATCAACAATGTGTTGGGCATAGGAGGACCTAAGAGGAGTGAAGACAAGTTTAGGCAGTGGAGGAATGAGCTTGCTAGGCACTGTTTTGTGAAGCAGGTTCCAATGAGTGCCAATTCAATGGCTCAAGCACAATTGATATTGAACATGTTTTCACCTGCTTATGGGTATAGCCTTGCACAAGTTGAGGGAACTTTAAGGCTTGGATGGAAGGATACTAGCTTGTACACAGCTTCTGCATGGACCTGCAGTAATTCTAGCTAG 1614 0.4362 MMKVGFEVVHANYNSNMIRPHMHETWDDHYSNNITTSLPFSSPTTPSNPYPKPATENNHCLNMGQNNELCDWMEEQVSDFTKHLVEDFPETTTTSDNLLSNNPTRVNIASHHNLNVPSLLSPKFSQRKPSCLFRPQFESFTNNDPPNFNLHIQTNTSTLDQSQHNVVYDQGLSLITLLMECAVAISVDNLGEAHRMLLELTQVSSPYKASCAERVVAYFAKAMTSRVMNSWLGVCSPLVDHKSINSSFQVFNNISPFIKFAHFTSNQAILEAVSHCDSIHIIDLDIMQGLQWPAFFHILATRMEGKPQVTMTGFGASMELLVETGKQLTNFARRLGMSLKFLPIATKIGEVIDVSTLHVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGGGSFLDRFVASLHYYSTLFDSLGAYLHNDDENRHRVEHGLLSREINNVLGIGGPKRSEDKFRQWRNELARHCFVKQVPMSANSMAQAQLILNMFSPAYGYSLAQVEGTLRLGWKDTSLYTASAWTCSNSS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0328 537 Pfam GRAS domain family 174 532 IPR005202 -
Gso10g0328 537 PANTHER OS05G0485400 PROTEIN 67 533 - -
Gso10g0328 537 ProSiteProfiles GRAS family profile. 165 532 IPR005202 -
Gso10g0328 537 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 67 533 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0328 Gso-Chr10 3517770 3519954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0328 135 532 GRAS Transcription Factor Family AT3G54220 52.068 1.25e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso10g0328 GRAS 4.1e-102 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0328 - - gmx:100785242 1070.46