Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0327 ATGGATTCTGCAAGGAGTTGGCTTCAGAAGTTCCAGCCTCGAGATAAAACCAGGGCTGCTGGGAAGAAAAAGGAGGAGGATGGTAATGGAGGAAACCAGGATTCGAACGAAGCCATAGATGAAGCATTGCTTTCCAGTGTCACGAAGCAGAAGGTGGCAGCAGCAAAGCAGTACATTGAAAACCATTACAAGGAGCAAATGAAGAACCTTCAGGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAGGATCAAAACAACCTGCTTAAGTTTTTAGAGAAAAAGGAAACAGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGAAGATTTTGAGTTATTGACAATGATTGGAAAAGGCGCATTTGGGGAGGTCAGAGTCTGTAGGGAGAAAACTAGCGGTCACGTATATGCAATGAAAAAGCTGAAAAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAGCATGTTAAAGCCGAAAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAGCTTTATTGTTCTTTCCAGGATGATGAACATTTGTATCTTATTATGGAGTATCTACCGGGTGGGGATATGATGACTCTACTTATGAGAAAGGATATCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAGTTTTAGCTATTGAATCTATACATAAGCACAATTATATACATAGGGATATCAAGCCAGACAACTTATTACTTGATAGATATGGACACTTGAAATTGTCAGATTTTGGACTTTGTAAACCATTAGATTGTAGTACACTTGAAGAAAATGATTTTTCTGTGGGTCAGAATGTGAATGGATCTACACAAAGCTCAACTCCTAAACGCTCACAACAGGAACAACTGCAACACTGGCAAATAAACAGGAGAACACTTGCTTATTCCACAGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTACGAAATGCTGGTGGGATATCCTCCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAGATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCCCCAGAAGCTAAAGATCTTATTAGTAAACTTTTGTGTAATGTCAATCAAAGGCTGGGGTCAAAAGGTGCAGATGAAATAAAGGCTCATCCATTCTTCAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGTCTGACAGCCAAACTCAATCATCTTCAAGATCTGGTCCATGGAGGAAGATGCTTTCATCTAAGAAGGATTTGAATTTTGTTGGATACACTTACAAGAACTTTGAAATTGTAAATGATTATCAAGTTCCCGGGATGGCTGAACTGAAGAAGAAACAGTCCAAACCAAAGAGGCCAACCATCAAGTCACTTTTCGATTGTGAATCAGAAACACCAGAGGCGTCCGATACGTCTGCAAATGATCAACCTGCTCAAGGAAGCTTTTTGAAGCTCTTGCCACCCCAGTTAGAGGTATCTCCTCATCGCGACAAGAATCTTCCTCCCAGGTCCTAA 1677 0.4037 MDSARSWLQKFQPRDKTRAAGKKKEEDGNGGNQDSNEAIDEALLSSVTKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVEDFELLTMIGKGAFGEVRVCREKTSGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEHLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLKLSDFGLCKPLDCSTLEENDFSVGQNVNGSTQSSTPKRSQQEQLQHWQINRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMLTCRKIVNWKTYLKFPEEARLSPEAKDLISKLLCNVNQRLGSKGADEIKAHPFFKGVEWNKLYQMEAAFIPEVNDELDTQNFEKFDESDSQTQSSSRSGPWRKMLSSKKDLNFVGYTYKNFEIVNDYQVPGMAELKKKQSKPKRPTIKSLFDCESETPEASDTSANDQPAQGSFLKLLPPQLEVSPHRDKNLPPRS* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0327 558 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 536 - -
Gso10g0327 558 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 490 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso10g0327 558 MobiDBLite consensus disorder prediction 9 31 - -
Gso10g0327 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Gso10g0327 558 MobiDBLite consensus disorder prediction 497 558 - -
Gso10g0327 558 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 536 - -
Gso10g0327 558 Pfam Protein kinase domain 122 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0327 558 MobiDBLite consensus disorder prediction 445 465 - -
Gso10g0327 558 SMART pkinase_C_6 417 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso10g0327 558 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Gso10g0327 558 SMART serkin_6 121 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0327 558 MobiDBLite consensus disorder prediction 518 533 - -
Gso10g0327 558 SUPERFAMILY Protein kinase-like (PK-like) 94 465 IPR011009 -
Gso10g0327 558 CDD STKc_NDR_like 119 481 - -
Gso10g0327 558 ProSiteProfiles Protein kinase domain profile. 121 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0327 558 MobiDBLite consensus disorder prediction 498 512 - -
Gso10g0327 558 Gene3D Phosphorylase Kinase; domain 1 92 204 - -
Gso10g0327 558 MobiDBLite consensus disorder prediction 1 36 - -
Gso10g0327 558 Gene3D Transferase(Phosphotransferase) domain 1 205 283 - -
Gso10g0327 558 Gene3D Transferase(Phosphotransferase) domain 1 313 436 - -
Gso10g0327 558 Coils Coil 63 83 - -
Gso10g0327 558 MobiDBLite consensus disorder prediction 448 464 - -
Gso10g0327 558 Pfam Protein kinase C terminal domain 435 480 IPR017892 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0327 Gso-Chr10 3504641 3513340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0327 1 513 AGC Kinase Gene Family AT2G20470 79.808 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Gso10g0327 Pkinase 1.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0327 K08790 - gmx:100779528 1116.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g0327 10 3504641 3513340 Gso19g1379 19 42622092 42629341 PCT
Gso10g0327 10 3504641 3513340 Gso3g1384 3 39809308 39816363 PCT