Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0326 ATGCCTTACCTTCTCCGACGAATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCCAACCTACTTGAAAGGGATCATGCCTTTGATGATCCAGATTATGGAAATCCAAAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAAAGTTTGGAAGGAACAGGGTCACCATGTTCTCCTTTTTTTGACAACTTCTGGTCACATTTATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATAGATGAATTTAATGATTCAAGTGAAATATTTATTTTCATTTTAACAACCAAAGTTGGGGGGTTGGGGACGAATCTTACAGGTGCAAATAGGGTGATCATCTATGACCCTGACTGGAATCCTTCAACTGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAGCGGGATGTAACAGTGTACAGGTTGATTACGCGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAACAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACACCTAATGTGGATGGAGAAACTGGGTCAACTGAAACGTCCAATATTTTCAGTCAAATATCTGAAGAAGTCAATATCATTGGGACACACAAAGAAAATAAGGATAAGTATAAACATAGCCAACCTGCTGAACTGGATTCTGAAGATGTTGCAGTTGGTAATGATGACAAATCAGAGAGAGGTTCTTTAAGAGGAAAGGGGAAAGAGAAGGTTGAACATAATAGTAATAAGGTTGATGAGGAAACAAATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCAGGATGAGGAGAAGATGAGACTTGAGGAGCAAGCATCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGGTCCGAAGCCATGATAGCAAAGCATCTAACGAATTACCCAACAAGGGAACTAATAAGATCAATGGATTTGCTGCTGGGGAATCTTCTGGTAAAGCATTATCTTCCGCCGAACTATTGGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCCGGGCTTGAACATCAGTTTGGTGTGTCGTCAAGTTCCACTAATCAAGCAAGATCTGTAGATGCTAGATCTTCCATGGCTACTGAAAATTCATCCGTACAACCTGAAGTATTGATTCGGAAAATCTGTACTTTTATACAACAACGAGGTGGTAGTTTCGATTCAGCCAGCATAGTTCAGTATTTCAAGGACCGTATTCCCTCAAAAGATGTTGTGCTGTTTAAGAATCTGTTAAAGGAAATTGCTACTCTGCATAAAGGATCAAATTGGGTTCTGAAACCAGACTACCAATTCTGA 1581 0.4054 MPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPNLLERDHAFDDPDYGNPKRSGKMKVVAQVLKVWKEQGHHVLLFLTTSGHIYRRMDGLTPVKQRMALIDEFNDSSEIFIFILTTKVGGLGTNLTGANRVIIYDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTPNVDGETGSTETSNIFSQISEEVNIIGTHKENKDKYKHSQPAELDSEDVAVGNDDKSERGSLRGKGKEKVEHNSNKVDEETNILKSLFDANGIHSAMNHDLIMNAQDEEKMRLEEQASQVAQRAAEALRQSRMVRSHDSKASNELPNKGTNKINGFAAGESSGKALSSAELLAQIRGNQEKAIGAGLEHQFGVSSSSTNQARSVDARSSMATENSSVQPEVLIRKICTFIQQRGGSFDSASIVQYFKDRIPSKDVVLFKNLLKEIATLHKGSNWVLKPDYQF* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0326 526 MobiDBLite consensus disorder prediction 275 318 - -
Gso10g0326 526 Pfam Helicase conserved C-terminal domain 109 190 IPR001650 -
Gso10g0326 526 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 44 240 IPR001650 -
Gso10g0326 526 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 1 427 - -
Gso10g0326 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 259 IPR027417 -
Gso10g0326 526 Coils Coil 347 374 - -
Gso10g0326 526 Pfam SNF2-related domain 2 71 IPR000330 GO:0005524|GO:0140658
Gso10g0326 526 SMART helicmild6 107 190 IPR001650 -
Gso10g0326 526 PANTHER SNF2/RAD54 FAMILY MEMBER 1 427 - -
Gso10g0326 526 Gene3D - 13 290 IPR027417 -
Gso10g0326 526 MobiDBLite consensus disorder prediction 374 394 - -
Gso10g0326 526 CDD SF2_C_SNF 89 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0326 Gso-Chr10 3498166 3501064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0326 105 231 RAD5 or RAD16-like Gene Family AT5G05130 39.098 5.46e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso10g0326 Helicase_C 9.3e-14 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0326 K10841 - gmx:100820025 947.962