Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0319 ATGCATTTAGGTCAGACAGATACTACTTCTGTGAAATGTCTGATCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGTCAAACAATGAAACCTATGCCCTTTCAGAACATCTGTAATAATATGGTTGGGGTGTTAAAGCGCTTGAAACCGGTGCTTGATGACATTATGGATTACCAAATCCCTTCAAATGTAAATCTATGTAAAGAGTGTGAGGAATTGGATATGCAGGTTAATGAAGCTAGGGATTTCATTGAAAAATGGAGTCCAAAGATGAGCAAGATTCACAGTGTTCTACAAGGTGGTACTTTGTTGATCAAGTTACAGAGCACCTCTCTAGATATCTGTCACATGATAGTTAAATCCTTACAGTCACCTCCATCTGCATCAGTTTTGGCTAATCTTCAGCACTATATCCAGGAACTTCAGTGTTTCAAGAAGGAAATGGCTATGGTCTTCATAGAAGAAGCACTAAGAAACCAAAGAGATAATGTTGAACTTTGCACGGAGCATCTCAAGGAAATTATTGAGTTACTTAAATTGACATCAAATCAGGAGCTCTTAAGAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAAATGAAGGGGGACTTGGAAGAACTTGATGATATTGTGATTCTTGTCTGTAATTTGCGTGATTATGTGATGAAAACTGAGTGTCCTGTAGTCAAGAGTGGTCTGTTAATCCCTCTATACTTCCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTCATTGTGGCTTCAGGTCAAACATATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAAACTCGTCAGAGACTTACTCCTACAAATCTCATTCCTAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAATGTCAAACTTTCTGGTAACTCTGAGCAAAATAATTCTGCCTGTATCACATCCCCCTCGGACCATTTATTGCCTCAAGATTTAACTCATGATTGTTGTGTTGAGTCTTTACCTAGTAGCAATTCCATTTCAAGATCAGCTCTGCAAACTGAAAATGCATTTGAAAAGCAAAAGGGTGATAACTCTTTAAGATTGTGCGAAGAATACAATGGATGCCAGAGTGGAGCAATTGAAAAGTGTGAGCAACAGTCCCCATATACTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTACTGATTGTGCGCATGCAGTTTCAAAAGAGGTGTCAGGGATATCCAATAAGCTTCAAAATGTGAAGGTACTGTCTGGAGAAATCACAAAGGTGTGTCCTCCTTCTCCTGGTAACAAACAATCAGGGATCTCTCCGTGGTTATCTGGAGCGCAATTTCAAAGCCCTGGATCAAATGTGGGAGTGTTGGAGAATGGAAATAATAATAATAGTCATTCAAGATTTGATTCCCATCCTGTTTTCAACTCCGGGTCGGATGAATTAACCACCTCATCTCATGTTATTAGATTGATTGAAGACCTTCACAGCCAATCAATTGAAACGCAAACTGCTGCTGCAGAAGAATTGAGGCTCCTTACAAAGCATAACAAGGAAAACCGTATCATTGTTGGGCAGTATGGGGCTGTTGCACCTTTGCTTTCACTGTTATATTCAGACTTGCAGGTAACACAAGAGCATGCTGTTACAGCTCTGCTGAATTTATCAATTAATGAAGACAACAAGGCCTTGATCATGGAAGCAGGAGCCATAGAACCACTTATCCATGTTTTAAGTACAGGAAATGATAGTGCCAAGGAGAATTCTGCGGCAACTATATTCAGCCTCTCAATAATTGAGAACAATAAAGCAAGAATTGGCCGTTCTGGAGCAGTTAAAGCTTTGGTGGATCTTCTTGCCTCAGGAACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTCTATTTAACCTGTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCGGTGAAGTTTCTGGTTTGGTTAATGGACCATGCTGAAGGAATGGTTGACAAGGCTGTTGCTCTTCTGTCAAACCTGTCAACAATTCCAGAGGGCCGATTAGAAATTGCAAGGGAAAGGGGCATCCCCTTACTAGTTGAAATTGTTGAGTATGGTTCACAGAGGGGAAAAGAAAATGCAGCCTCCATTCTCTTGCAATTATGCCTTCATAGTTCTAAGTTCTGTACTCTGGTTTTGCAAGAAGGAGCTGTCCCTCCCCTGGTGGCATTATCGATATCCGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGCCATTTTCGTAATCAACGGGAAGCAGCTACTACTGGGAAAGGGAAATCATGA 2373 0.4058 MHLGQTDTTSVKCLINSISRFIHLVSCQTMKPMPFQNICNNMVGVLKRLKPVLDDIMDYQIPSNVNLCKECEELDMQVNEARDFIEKWSPKMSKIHSVLQGGTLLIKLQSTSLDICHMIVKSLQSPPSASVLANLQHYIQELQCFKKEMAMVFIEEALRNQRDNVELCTEHLKEIIELLKLTSNQELLRESIAVEKERLNAEVNKMKGDLEELDDIVILVCNLRDYVMKTECPVVKSGLLIPLYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTPTNLIPNYTVKAMIATWCEENNVKLSGNSEQNNSACITSPSDHLLPQDLTHDCCVESLPSSNSISRSALQTENAFEKQKGDNSLRLCEEYNGCQSGAIEKCEQQSPYTHSRSESFSSSISSTDCAHAVSKEVSGISNKLQNVKVLSGEITKVCPPSPGNKQSGISPWLSGAQFQSPGSNVGVLENGNNNNSHSRFDSHPVFNSGSDELTTSSHVIRLIEDLHSQSIETQTAAAEELRLLTKHNKENRIIVGQYGAVAPLLSLLYSDLQVTQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLSTGNDSAKENSAATIFSLSIIENNKARIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVWLMDHAEGMVDKAVALLSNLSTIPEGRLEIARERGIPLLVEIVEYGSQRGKENAASILLQLCLHSSKFCTLVLQEGAVPPLVALSISGTPRAKEKAQQLLSHFRNQREAATTGKGKS* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0319 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 315 IPR013083 -
Gso10g0319 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 667 708 IPR000225 GO:0005515
Gso10g0319 790 Coils Coil 189 216 - -
Gso10g0319 790 SUPERFAMILY ARM repeat 506 776 IPR016024 -
Gso10g0319 790 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Gso10g0319 790 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 784 - -
Gso10g0319 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 626 668 IPR000225 GO:0005515
Gso10g0319 790 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Gso10g0319 790 SUPERFAMILY RING/U-box 241 315 - -
Gso10g0319 790 Pfam Armadillo/beta-catenin-like repeat 618 654 IPR000225 GO:0005515
Gso10g0319 790 Pfam Armadillo/beta-catenin-like repeat 574 613 IPR000225 GO:0005515
Gso10g0319 790 Pfam Armadillo/beta-catenin-like repeat 533 572 IPR000225 GO:0005515
Gso10g0319 790 PANTHER U BOX DOMAIN-CONTAINING 11 784 - -
Gso10g0319 790 SMART arm_5 533 573 IPR000225 GO:0005515
Gso10g0319 790 SMART arm_5 615 655 IPR000225 GO:0005515
Gso10g0319 790 SMART arm_5 696 736 IPR000225 GO:0005515
Gso10g0319 790 SMART arm_5 656 695 IPR000225 GO:0005515
Gso10g0319 790 SMART arm_5 574 614 IPR000225 GO:0005515
Gso10g0319 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 586 IPR000225 GO:0005515
Gso10g0319 790 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Gso10g0319 790 Gene3D - 493 785 IPR011989 -
Gso10g0319 790 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0319 Gso-Chr10 3392976 3397967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0319 7 790 U-box Gene Family AT3G54790 53.759 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0319 - - gmx:100800949 1514.21