Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0313 ATGGGGAGAGCTCCTTGCTGCGAGAAAATGGGATTGAAGAAAGGATTATGGACTCAAGAAGAAGATCTGATTCTCATCCATCATATCAACACACATGGCCACAAAAATTGGCGTGCCCTACCCAAACAAGCTGGGCTGTTGAGGTGTGGAAAGAGTTGCAGACTCCGGTGGATAAATTATTTGAAGCCAGATATTAAACGGGGCAACTTTACCAGAGAAGAAGAGGACATGGTAATCCAGTTGCATGAAACGTTGGGGAACAGATGGTCAGCCATAGCAGCAAAATTTCCGGGGCGCACAGACAACGAAATAAAGAATGTGTGGCACACCCACTTGAAGAAGAGGCTGCCCCAACAGGCAAAACAAAAGCAACAGCAAAAGCTATCTTCCTTGGACACCCTAAATTCCAAACAACAACCCGTGAATCTTCCCACAGAGGAGAAGAAGCCACTATCTCCCCCACAGTGTGTAAGTAGTAGCATGTCAACCCTCACCACTAGTAGTGACACCACCACCAACGAGCATAATAGTAATCATCATCACGTGCCCATGATGAATAACAGTACTACTGCTCCTGAATCGCTGGACGATGATTTCTGGTCTCAAGTTCTCTCGGCTGATAATAATAATTCCGATGCCACCACCAGTTTTCCGGCCACTGGCACCGCGGCTGACGGGAAGTTCCAAGGGGTCCATCCATCAAGTGTGTACAATAATGTGGACTATTGGTTTGATGTTTACATGGGAGCGCAGGAATTTCAAAAATTTTGA 771 0.463 MGRAPCCEKMGLKKGLWTQEEDLILIHHINTHGHKNWRALPKQAGLLRCGKSCRLRWINYLKPDIKRGNFTREEEDMVIQLHETLGNRWSAIAAKFPGRTDNEIKNVWHTHLKKRLPQQAKQKQQQKLSSLDTLNSKQQPVNLPTEEKKPLSPPQCVSSSMSTLTTSSDTTTNEHNSNHHHVPMMNNSTTAPESLDDDFWSQVLSADNNNSDATTSFPATGTAADGKFQGVHPSSVYNNVDYWFDVYMGAQEFQKF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0313 256 CDD SANT 69 112 IPR001005 -
Gso10g0313 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso10g0313 256 MobiDBLite consensus disorder prediction 121 145 - -
Gso10g0313 256 Gene3D - 13 66 - -
Gso10g0313 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Gso10g0313 256 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gso10g0313 256 MobiDBLite consensus disorder prediction 114 181 - -
Gso10g0313 256 CDD SANT 17 61 IPR001005 -
Gso10g0313 256 MobiDBLite consensus disorder prediction 152 181 - -
Gso10g0313 256 Gene3D - 68 141 - -
Gso10g0313 256 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso10g0313 256 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso10g0313 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso10g0313 256 PANTHER TRANSCRIPTION FACTOR MYB15 1 254 - -
Gso10g0313 256 SMART sant 13 63 IPR001005 -
Gso10g0313 256 SMART sant 66 114 IPR001005 -
Gso10g0313 256 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso10g0313 256 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0313 Gso-Chr10 3331217 3334175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0313 1 256 MYB Transcription Factor Family AT2G31180 49.225 6.38e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g0313 Myb_DNA-binding 7.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0313 K09422 - gmx:106794951 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g0313 10 3331217 3334175 Gso19g1366 19 42462507 42464728 PCT
Gso10g0313 10 3331217 3334175 Gso3g1371 3 39651879 39653848 PCT