Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0309 ATGGATTTTGATTCATCTTTCTTCCAATACCAAAACTTTAACTCTTCCTTTGTAAATTCCTCTGTTTGTGCAGAACCATTCCCTTGGGAAGACTTTCTTTTCTTCAATGAAGAAAACACCACCACCACCACCACCGCCCTTGATTCCTTCACCATCACTGACCACTCCTCACAATCACAAATCAAGGAATCATCATCCTCAGATTATTCCAACTCTTCAGGCTCCTTGGTCAGCAGCACTGAGTCATCACAACTAGAAGTGTCATCCAATTTAACTCATGCAAGCCATCAACTCAAAGAAACACATGCATCACCACAACCACAACCACCAAAGGAAACTAACAAAGACAAGAGACCCTTTAGAGGAGTGAGGAGAAGGCCATGGGGGAAATTTGCTGCTGAAATAAGAGACTCAACGAGAAATGGTGTTAGAGTTTGGATTGGCACATTTGACACTGCTGAAGCAGCAGCACTGGCTTATGATCAAGCTGCTTTGTCCACAAGAGGGTCCATGGCAGTGCTAAATTTCCCAGAAGAAGTGGTGAGGGAATCACTCAAAGACATGCAGAGTAATAATAAGCCAATATCATTGGAAGATGGTTCCTCTCCAGTGTTGGCACTCAAGAGAAAACACACCATGAGAAGAAAATCCAAGGCTACCAACAAAAAAAACAAAAGGGACCATGGAATGGAATCACAAAATGTGAATATTATTTCACAAAATGTGCTGGTGTTGGAGGATTTGGGTTCTGAGTACTTGGAGCAACTTCTCAGCTTGACTTCTTCTTCTGATGATGATTATTTCCTATGCTAG 813 0.4207 MDFDSSFFQYQNFNSSFVNSSVCAEPFPWEDFLFFNEENTTTTTTALDSFTITDHSSQSQIKESSSSDYSNSSGSLVSSTESSQLEVSSNLTHASHQLKETHASPQPQPPKETNKDKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMQSNNKPISLEDGSSPVLALKRKHTMRRKSKATNKKNKRDHGMESQNVNIISQNVLVLEDLGSEYLEQLLSLTSSSDDDYFLC* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0309 270 CDD AP2 120 178 IPR001471 GO:0003700|GO:0006355
Gso10g0309 270 PANTHER DNA-BINDING DOMAIN 4 261 IPR044808 GO:0003700|GO:0009873
Gso10g0309 270 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Gso10g0309 270 Gene3D AP2/ERF domain 119 179 IPR036955 GO:0003700|GO:0006355
Gso10g0309 270 MobiDBLite consensus disorder prediction 53 126 - -
Gso10g0309 270 MobiDBLite consensus disorder prediction 53 110 - -
Gso10g0309 270 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Gso10g0309 270 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Gso10g0309 270 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 261 - -
Gso10g0309 270 MobiDBLite consensus disorder prediction 210 232 - -
Gso10g0309 270 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Gso10g0309 270 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Gso10g0309 270 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0309 Gso-Chr10 3304216 3305418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0309 113 258 AP2-EREBP Transcription Factor Family AT3G23240 59.589 3.46e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g0309 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0309 K14516 - gmx:100780775 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1362 19 42414451 42415510 Gso10g0309 10 3304216 3305418 PCT
Gso3g1367 3 39604848 39605810 Gso10g0309 10 3304216 3305418 PCT
Gso10g0309 10 3304216 3305418 Gso19g1362 19 42414451 42415510 PCT
Gso10g0309 10 3304216 3305418 Gso3g1367 3 39604848 39605810 PCT