Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0308 ATGGAGGGTGGAAGATCATCAGTTTCAAATGGGAATGTTGAGGTTCGTTATAGAGGGATTAGAAGAAGGCCATGGGGAAAGTTTGCAGCAGAGATTCGTGACCCTACAAGGAAAGGAACAAGGATATGGCTTGGAACATTTGACACTGCTGAACAAGCTGCACGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGCCACAGAGCAATTCTCAACTTCCCAAATGAGTATCAATCTCATAATCCAAACTCTTCTTTGCCTATGCCTCTAGCTGTGTCAGCTCCTCCTTCTTATTCTTCTTCTTCTTCCACTTCTAATTATTCCGGTGATGATAATAATAACCACCTTGTGAGACCTGCTTTTTCTGGAGAAATAATGCAAGGTGGTGATCATGATGATGATACTTTTGAGTTGGAGTACTTCGATAATAAGTTGCTCGAGGAACTCCTTCAGATGCAAGATAACAGACACTTCTAA 477 0.4172 MEGGRSSVSNGNVEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQSHNPNSSLPMPLAVSAPPSYSSSSSTSNYSGDDNNNHLVRPAFSGEIMQGGDHDDDTFELEYFDNKLLEELLQMQDNRHF* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0308 158 PANTHER DNA-BINDING DOMAIN 16 149 IPR044808 GO:0003700|GO:0009873
Gso10g0308 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 149 - -
Gso10g0308 158 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Gso10g0308 158 MobiDBLite consensus disorder prediction 82 115 - -
Gso10g0308 158 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Gso10g0308 158 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Gso10g0308 158 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Gso10g0308 158 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Gso10g0308 158 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Gso10g0308 158 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Gso10g0308 158 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0308 Gso-Chr10 3294203 3295026 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0308 14 157 AP2-EREBP Transcription Factor Family AT3G23230 50.000 1.03e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g0308 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0308 - - gmx:100779173 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1361 19 42403384 42404140 Gso10g0308 10 3294203 3295026 PCT
Gso3g1366 3 39592683 39593685 Gso10g0308 10 3294203 3295026 PCT
Gso10g0308 10 3294203 3295026 Gso19g1361 19 42403384 42404140 PCT
Gso10g0308 10 3294203 3295026 Gso3g1366 3 39592683 39593685 PCT