Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0306 ATGACTTCCCCTTTGTTTCAGAGCCCATGTTATTGGGACATGTTGCAGGAGCATGACCCTTATTCATCAGAAGTTTTGTTCGATTCAATGTCAAGCACTAATGCTGTTCTTGACCCTATCCACGATTCTCTTTCCTTCGATATGGTTGACTTCTCCACAGCACCAACAACAGAAGGAAACCACAACGATGAGGCAAAGCAATTGGTGGTGAAATCTGAAGGGCAGAATAAGGAAAGGTCTTACATTGGTGTGAGAAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGACACAACGAGGAATGGCACTAGGGTTTGGCTTGGAACCTTTGACACTGCAGAGGCTGCTGCTTTGGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCAAAGTGCTGTACTCAATTTTCCAGTCAAAAGGGTCAAAGAGTCTTTGCAAGAGATCCAATATAGCTGCTTCTTCAATGGATCTTCTTCTCCCGCACTTGCACTCAAAGAGAGGCACTGCATCCAAAGAAAATTGTCATCAAAAGGTAAAAAGTGTAAAGGGAAAGAGACATCAGAAAGTGTGGTTGTGTTAGAAGATTTGGGAGTTGACTATCTAGAGCAACTTCTAAGCTTATCTGATCAAAGTGAAAGCCCTAGCTACTTCAACTATTAA 663 0.4299 MTSPLFQSPCYWDMLQEHDPYSSEVLFDSMSSTNAVLDPIHDSLSFDMVDFSTAPTTEGNHNDEAKQLVVKSEGQNKERSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDTAEAAALAYDQAAFSMRGQSAVLNFPVKRVKESLQEIQYSCFFNGSSSPALALKERHCIQRKLSSKGKKCKGKETSESVVVLEDLGVDYLEQLLSLSDQSESPSYFNY* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0306 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 50 208 - -
Gso10g0306 220 SUPERFAMILY DNA-binding domain 81 139 IPR016177 GO:0003677
Gso10g0306 220 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Gso10g0306 220 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Gso10g0306 220 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
Gso10g0306 220 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Gso10g0306 220 PANTHER DNA-BINDING DOMAIN 50 208 IPR044808 GO:0003700|GO:0009873
Gso10g0306 220 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Gso10g0306 220 Gene3D AP2/ERF domain 80 140 IPR036955 GO:0003700|GO:0006355
Gso10g0306 220 CDD AP2 81 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0306 Gso-Chr10 3260339 3261161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0306 62 212 AP2-EREBP Transcription Factor Family AT3G23240 54.487 1.62e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso10g0306 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0306 K14516 - gmx:100782036 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1360 19 42381286 42382139 Gso10g0306 10 3260339 3261161 PCT
Gso10g0306 10 3260339 3261161 Gso19g1360 19 42381286 42382139 PCT