Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0304 ATGGAAGAGGAGTCTAAGGAGAAAAGGGACACTAAGGGGGAGCCACGGTATAGAGGAGTGCGGCGGCGGCCGTGGGGGAAGTTTGCGGCCGAAATCCGGGACCCGGCCCGGCACGGAGCCCGAGTTTGGCTGGGGACATTTCTCACGGCAGAGGAGGCTGCAAGGGCTTATGACCGAGCTGCCTATGAGATGAGGGGTGCTTTAGCTGTTCTCAATTTTCCAAATGAGTATCCTTCATGCTCTTCTATGAGCTCATCTTCAACATTAGCACCTTCTTCTTCATCTTCAAATTCAATGCTTAAAAATGATCATGGTAAACAAGTTATTGAGTTCGAGTGCTTGGATGACAAATTGTTAGAGGACCTTCTTGATTGTGATGACTATGCCTACGAGAAAGACTTGCCTAAGAACTGA 414 0.4903 MEEESKEKRDTKGEPRYRGVRRRPWGKFAAEIRDPARHGARVWLGTFLTAEEAARAYDRAAYEMRGALAVLNFPNEYPSCSSMSSSSTLAPSSSSSNSMLKNDHGKQVIEFECLDDKLLEDLLDCDDYAYEKDLPKN* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0304 137 PANTHER OS09G0571700 PROTEIN 10 127 - -
Gso10g0304 137 PANTHER DNA-BINDING DOMAIN 10 127 IPR044808 GO:0003700|GO:0009873
Gso10g0304 137 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Gso10g0304 137 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Gso10g0304 137 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Gso10g0304 137 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Gso10g0304 137 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Gso10g0304 137 MobiDBLite consensus disorder prediction 78 101 - -
Gso10g0304 137 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Gso10g0304 137 Pfam AP2 domain 15 66 IPR001471 GO:0003700|GO:0006355
Gso10g0304 137 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0304 Gso-Chr10 3252973 3253624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0304 14 127 AP2-EREBP Transcription Factor Family AT3G23230 61.667 3.91e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g0304 AP2 4.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0304 - - gmx:100781487 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g0304 10 3252973 3253624 Gso19g1359 19 42368383 42369097 PCT
Gso10g0304 10 3252973 3253624 Gso3g1364 3 39572961 39573269 PCT