Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0300 ATGAACAAATCCTCAGATGCAACTGCGTCTCCTACGTGCAGAGGCAGATACAAAAAACCCAATTTCCGAAGCTCCAAGTCCCAACCCCCAAGCCCCGTCCAGTTCAGCTCCAAGACGCCGGAGAAGCCGCCGCAGCGAATCCGCAACCGTGGCGTCGCGCTCTCCGTCGCTGACATCAGAAAGGCCGCCTGCAAGCGCTTGCAGGATCAGAAGCAATGCACTGAAATGACGTCGGCGCCATCGTCATCGTCGCTGAACAAGAGTGTCAGGAGGCAAATCTCACTGTGGCCTTCTTCTCCCAGCAAACCAAAGACTACTGATGATGAATCCAACAAGCTTCCCGAGAAATATGAAATTTTGGATGAGTTCTTCGATCGCTTGGATACTTTGGTTTCATTGCACCGTCTGAAACGGTGGACTCCAACCTTTACTTCAATCAGTTCAAGGATTGAATCTTTAACTGACAGGAGGTTTACTCACAGTCATCTAGCCCAGTTGAAATTTATCTTGCCTAATGCTATTGTTCTTAAGAAGCATCTTGTGCTTGATGAACGGACGAGTTGTATGAAGCCGGATATTCACATTTCTTTAGACCCTGATGCGGTAGAGGCCGATGATGCCAAGTTGCCCCCACAACGTGGGAGAGTGTCGCTGAAGAAGGTGTTTCGGGCACGGCTAAGAGATTTTTGTGAATCTCATCCTGAGGGTGATGAAATTCCAGAAGGGACATTGCCTGAGCCATTCAATCGCCCAAAGAAAGACAGTGTTTTGGACATGTTGGAAACTCGCCTCCCAACAAAATTGCCACCCTGCATGCGTTATAGTGACATTGTCAATAATGCAGAGTCTGCTAACTTGGATGAGAAATTGTCTGTACCTGTCAATACATCAGTTGAATTGCCTAATGAGCATCTGGCAGCACCTTCTCACATGTCTCCATCCTTTAGAGCAGATGATGTACAGAAAAATCCTCTGTTAGATTTATTACAGCCACTGGCTTTTCCAGTTTCAGAGTCAAGCCGGAATGAAAATACACCCTTTGTGGATACTGAATCTCATCTGAAAACGTCCCCAGCTAAGTTGGCTTCAGAAGCATCTAGTAGTGAAAGTTGTCTAACAATTTGTGCTCCTCTGGAATCATCATGTGCTCACCCTGCTACTCCAAGCAAAACCACTGAGTACACCGAAAACAAAGATGGGTCTCTCAAGAGCATTGATGCCATGTCAACTCCAGCTAAACTTGTTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGGTCACCCAAAAGGCATTATATGAGCCCAGATGACCACTCTATCAGTTCTTTGAACAAGTTAGCTCGGCGTCCACCTCGCTCAAGGTCATTGAAATTTGACACTCCAGTGAAGAACAAGGATGATATTTTTGACACCCTCCAAGAAAGTACTATCCAATCGATTAGAGAAAAGGAAAGGCTGGCCATGGAGAAAAGAGACCCAGCTATCACAGAAGCAAAGAAACGAAAGAAAAATATAGCTAGCCTCCCTAAGCTCTTTGACATGATACGTGGGTTACTTAGACAGCGGAATTGTATCACTAAAGCAGAGCTTGTAAGCAAGATAATCTCAAGCCGATGTGATATTGCTGACAGAAGTGAAGTTGAAGAGCAGCTAAATTTGTTGCAAGAACTAGCACCAGAATGGATTTCTGAGAAGCAGGTCTCTAGTGGGGATTTGCTATTATTCATAAATAAAATGTTGAGCCCTGAAACCGTTCGAGCATCCCTTGAAGAAGCAACATAG 1791 0.4551 MNKSSDATASPTCRGRYKKPNFRSSKSQPPSPVQFSSKTPEKPPQRIRNRGVALSVADIRKAACKRLQDQKQCTEMTSAPSSSSLNKSVRRQISLWPSSPSKPKTTDDESNKLPEKYEILDEFFDRLDTLVSLHRLKRWTPTFTSISSRIESLTDRRFTHSHLAQLKFILPNAIVLKKHLVLDERTSCMKPDIHISLDPDAVEADDAKLPPQRGRVSLKKVFRARLRDFCESHPEGDEIPEGTLPEPFNRPKKDSVLDMLETRLPTKLPPCMRYSDIVNNAESANLDEKLSVPVNTSVELPNEHLAAPSHMSPSFRADDVQKNPLLDLLQPLAFPVSESSRNENTPFVDTESHLKTSPAKLASEASSSESCLTICAPLESSCAHPATPSKTTEYTENKDGSLKSIDAMSTPAKLVSTPIRLMSATPALRSPKRHYMSPDDHSISSLNKLARRPPRSRSLKFDTPVKNKDDIFDTLQESTIQSIREKERLAMEKRDPAITEAKKRKKNIASLPKLFDMIRGLLRQRNCITKAELVSKIISSRCDIADRSEVEEQLNLLQELAPEWISEKQVSSGDLLLFINKMLSPETVRASLEEAT* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0300 596 Pfam DNA replication factor CDT1 like 113 206 IPR014939 -
Gso10g0300 596 Gene3D - 467 596 IPR038090 -
Gso10g0300 596 MobiDBLite consensus disorder prediction 430 463 - -
Gso10g0300 596 MobiDBLite consensus disorder prediction 22 42 - -
Gso10g0300 596 SMART CDT1_2 113 246 IPR014939 -
Gso10g0300 596 CDD Cdt1_c 478 593 IPR032054 -
Gso10g0300 596 MobiDBLite consensus disorder prediction 68 112 - -
Gso10g0300 596 PANTHER DNA REPLICATION FACTOR CDT1 19 596 IPR045173 GO:0003677|GO:0030174|GO:0071163
Gso10g0300 596 Pfam DNA replication factor Cdt1 C-terminal domain 479 570 IPR032054 -
Gso10g0300 596 SUPERFAMILY "Winged helix" DNA-binding domain 110 248 IPR036390 -
Gso10g0300 596 MobiDBLite consensus disorder prediction 1 54 - -
Gso10g0300 596 MobiDBLite consensus disorder prediction 70 104 - -
Gso10g0300 596 CDD Cdt1_m 112 267 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0300 Gso-Chr10 3218331 3221972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0300 409 594 Core DNA Replication Machinery Family AT2G31270 46.411 2.09e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0300 K10727 - gmx:100778818 1151.35