Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0295 ATGACTGGTACAGGATCTCCTTGTGGAGCCTGCAAGTTCTTGAGAAGAAAATGTGTGAGAGGCTGTGTTTTTGCACCTTACTTTTGCCAAGAGCAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTCGCTCACCTTCCTGTGAGTGATCGTTGTGAAGCTGCTGTCACAATCTCCTATGAAGCTCAAGCCAGACTTCAGGATCCAATTTATGGATGTGTCTCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGCTTACCTTAAGGAACAAGCAGCTCAGAGTTGTCTCAATGGCACTATCAATGAAAACCCTAATGAAAAATTATTGGAAAAATCTTCTGCTGCTTTACCCCAAGACCTTCAAAGTTGGTTTCAGTTGGAAAATTCCAACCTGGGGCCAGAATTTCTTCCTAACATGTGTACTAATTTATCAACACAACATTATGGGAACAATGCTCTCATGATGGAAGATCTAAACCCTATTGGGGTTAATAATGAAAATTCAGGAGCCATGGAAGAAAGCAGCTCCTTCTCCAGCTTTGATGAGAGTTCTAATAATAGCTACTCTATGTCCTATGACATGCAAACAAACAGGAGGACGTGGGGTTTTCATGAAGTGGAGGATCTACATTCAGTGGCTTTTGGATACGGAACTCGATCACATTCATGA 720 0.4236 MTGTGSPCGACKFLRRKCVRGCVFAPYFCQEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNGTINENPNEKLLEKSSAALPQDLQSWFQLENSNLGPEFLPNMCTNLSTQHYGNNALMMEDLNPIGVNNENSGAMEESSSFSSFDESSNNSYSMSYDMQTNRRTWGFHEVEDLHSVAFGYGTRSHS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0295 239 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Gso10g0295 239 Coils Coil 87 107 - -
Gso10g0295 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 236 - -
Gso10g0295 239 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Gso10g0295 239 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0295 Gso-Chr10 3156177 3157728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0295 7 233 AS2 family AT3G58190 51.528 1.54e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso10g0295 LOB 4.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0295 K13945 - gmx:100776678 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1355 19 42292456 42293655 Gso10g0295 10 3156177 3157728 PCT
Gso3g1359 3 39512847 39514021 Gso10g0295 10 3156177 3157728 PCT
Gso10g0295 10 3156177 3157728 Gso19g1355 19 42292456 42293655 PCT
Gso10g0295 10 3156177 3157728 Gso3g1359 3 39512847 39514021 PCT