Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0294 ATGGCTTCTGCAACTGGCTCTGGTTCTTCTTCTGGCTTCGGATCTCCCTGTGGGGCATGCAAGTTTCTGCGAAGAAAGTGTGTCACTGATTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGAGCTGCTAAATTCGCTGCCATTCATAAGGTGTTCGGTGCTAGCAACGTTTCCAAGCTGCTCTTGCGTATACCAGCTCACGGTCGTTTTGAGGCAATACTCACAATTGCTTATGAAGCTCAAGCTCGCCTTAGAGACCCTGTTTATGGTTGTGTCTCCCATATTTTCGCCTTGCAACAACAGGTAGCATGCTTGCAGGCACAAGTAATGCAAATGAAGGCACAGCTAGACCAGAACCACATGGAGCCCAGGAACTTTGAGAATCATTGGTCAGAGAATGTTGCACAATCATTCAATCCATTTTGTCCCACTTCCATGAATAACCTCATATCTCCTCAGAGCTCACTCGATTCATTGGGTTATAGCAGCATCAATGATGGAATGAGCATGCTAGATGTACAAAGCAGCAGAGAGGAATATTTCGCACTGCAAGCCTGTAATTCTAAGAAAAGATCATATAACAATGACTTGGGTGAGCTGCAAGAATTGGCACTTAGGATGATAAGGAACTGTGACTAG 642 0.4502 MASATGSGSSSGFGSPCGACKFLRRKCVTDCIFAPYFCSEQGAAKFAAIHKVFGASNVSKLLLRIPAHGRFEAILTIAYEAQARLRDPVYGCVSHIFALQQQVACLQAQVMQMKAQLDQNHMEPRNFENHWSENVAQSFNPFCPTSMNNLISPQSSLDSLGYSSINDGMSMLDVQSSREEYFALQACNSKKRSYNNDLGELQELALRMIRNCD* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0294 213 Coils Coil 96 116 - -
Gso10g0294 213 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 210 - -
Gso10g0294 213 Coils Coil 184 204 - -
Gso10g0294 213 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
Gso10g0294 213 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
Gso10g0294 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 4 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0294 Gso-Chr10 3147080 3148742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0294 3 211 AS2 family AT2G42430 50.820 5.23e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso10g0294 LOB 7.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0294 K13944 - gmx:100776145 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1354 19 42281238 42282982 Gso10g0294 10 3147080 3148742 PCT
Gso3g1358 3 39491504 39493971 Gso10g0294 10 3147080 3148742 PCT
Gso10g0294 10 3147080 3148742 Gso19g1354 19 42281238 42282982 PCT
Gso10g0294 10 3147080 3148742 Gso3g1358 3 39491504 39493971 PCT