Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0291 ATGGAATTCAGCTACCAAGAAGATTCCTCCAAAAGCTCGAGCAACGAAATCGATCGATCGTCCGAACAGAATGATGAGACGGGCACCGGAAGATCCTTCGAGTGTGTGTTTTGCAAGAGAGGCTTCAACACTGCACAGGCTTTGGGGGGACACATGAACATACACAGAAAAGCTAGAGCCAATAACAGCAAGGCCAAGCCCAATTTTCCTCCCTCGAGTTCAAGCAAGGTTGATCATCATGAGAGTAATAACTATGCAAATCCAACCTATCTTACAAGAGGGAATCACTATTCTTCTACTCTTCCTGATCATAGAGAGGTAGATGATGTTAATTACAATTACTACCATCAATTATATTTTCCCTCACCCGCATCTGGTGCCAAATCACCTTCACATGTACAATATAGTAGTGAGGCTTTGTGTGTAGAGAACCAAAGGGATCCTCATCTTCTGTTTGGACAAGATTGGAGGCAAAGGGGTTTGAGTTTGTACACTAATCCACTATGTGTACATGAAAATAAAGACAAGATAGAAAACAACAGTGAAGAGGACGATCTGGATTTGGAGCTTAGACTTGGTTATCATCCATAG 591 0.423 MEFSYQEDSSKSSSNEIDRSSEQNDETGTGRSFECVFCKRGFNTAQALGGHMNIHRKARANNSKAKPNFPPSSSSKVDHHESNNYANPTYLTRGNHYSSTLPDHREVDDVNYNYYHQLYFPSPASGAKSPSHVQYSSEALCVENQRDPHLLFGQDWRQRGLSLYTNPLCVHENKDKIENNSEEDDLDLELRLGYHP* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0291 196 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 1 196 - -
Gso10g0291 196 SUPERFAMILY beta-beta-alpha zinc fingers 31 59 IPR036236 -
Gso10g0291 196 Gene3D Classic Zinc Finger 7 87 - -
Gso10g0291 196 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Gso10g0291 196 PANTHER OS07G0101800 PROTEIN 1 196 - -
Gso10g0291 196 Pfam C2H2-type zinc finger 33 57 - -
Gso10g0291 196 MobiDBLite consensus disorder prediction 60 99 - -
Gso10g0291 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Gso10g0291 196 MobiDBLite consensus disorder prediction 65 98 - -
Gso10g0291 196 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0291 Gso-Chr10 3119851 3120993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0291 33 125 C2H2 Transcription Factor Family AT5G43540 36.735 8.20e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0291 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0291 - - gmx:102661128 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1352 19 42255377 42256577 Gso10g0291 10 3119851 3120993 PCT
Gso3g1353 3 39459127 39460364 Gso10g0291 10 3119851 3120993 PCT
Gso10g0291 10 3119851 3120993 Gso19g1352 19 42255377 42256577 PCT
Gso10g0291 10 3119851 3120993 Gso3g1353 3 39459127 39460364 PCT