Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0290 ATGGAAGGAAACTATCTGAACAGAAACAGCACTACTCCACAGAGAGAGGATCATAGCTTTGGTTTTGAGGAGCATCCATGGGGAACTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATCGGGCAAGATTGAGATCATCCTTATCTTCATGGGTTTCTGAATGCCCTAAACCTAACCCTAACACTAAGCCTAATAATAATAACCCAACTCTTCTTCCACCACCCCCTTCTTCTTCACCATATCCTTTATTATCTGATGAGCCTTTGAACTATGCACATCCTTCTCCACTTTGTAGTCCTTGTCTCACTTTGTCTTCTTCACCCTCCCCAGCTTCTACCAGTGGAGACAAGAAACCAAGACTCACCCCTTCTCATCATCAATTTCCTCTTTTGAGTCCTCAAAGCAGCCAAATTAAGATGATGAGTGAGAACACAAGGAGTGATTTCAGTGCTGATGAGGAAATGAAGGGCTATGTGGAGGAGGAGGAGCACAAGGGTTTCCAGAAGAATGAGCAAAACATTACATTGGAATTAGGAATAGGGTTGCTTAAACACCAAGAGGAGAAGTTGGATTTGGAGCTTCGACTCGGGCATTAA 660 0.4379 MEGNYLNRNSTTPQREDHSFGFEEHPWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPNTKPNNNNPTLLPPPPSSSPYPLLSDEPLNYAHPSPLCSPCLTLSSSPSPASTSGDKKPRLTPSHHQFPLLSPQSSQIKMMSENTRSDFSADEEMKGYVEEEEHKGFQKNEQNITLELGIGLLKHQEEKLDLELRLGH* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0290 219 MobiDBLite consensus disorder prediction 167 187 - -
Gso10g0290 219 MobiDBLite consensus disorder prediction 70 107 - -
Gso10g0290 219 SMART c2h2final6 36 58 IPR013087 -
Gso10g0290 219 Pfam C2H2-type zinc finger 36 60 - -
Gso10g0290 219 MobiDBLite consensus disorder prediction 70 87 - -
Gso10g0290 219 MobiDBLite consensus disorder prediction 124 187 - -
Gso10g0290 219 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 8 219 - -
Gso10g0290 219 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Gso10g0290 219 MobiDBLite consensus disorder prediction 1 16 - -
Gso10g0290 219 PANTHER OS07G0101800 PROTEIN 8 219 - -
Gso10g0290 219 Gene3D Classic Zinc Finger 21 85 - -
Gso10g0290 219 MobiDBLite consensus disorder prediction 1 24 - -
Gso10g0290 219 MobiDBLite consensus disorder prediction 88 103 - -
Gso10g0290 219 MobiDBLite consensus disorder prediction 124 139 - -
Gso10g0290 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Gso10g0290 219 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Gso10g0290 219 MobiDBLite consensus disorder prediction 148 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0290 Gso-Chr10 3110289 3111551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0290 1 218 C2H2 Transcription Factor Family AT3G23130 37.054 2.90e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0290 zf-C2H2_6 6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0290 - - gmx:102660985 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1351 19 42245537 42246729 Gso10g0290 10 3110289 3111551 PCT
Gso3g1352 3 39444539 39445752 Gso10g0290 10 3110289 3111551 PCT
Gso10g0290 10 3110289 3111551 Gso19g1351 19 42245537 42246729 PCT
Gso10g0290 10 3110289 3111551 Gso3g1352 3 39444539 39445752 PCT