Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0288 ATGGTGGGTGAGAAGTTTTGTGTGAGCGAAGATGACAAGGGTGTGTTGGAGTCTGTGTTGGGTGCAGAGGCTGTTGCGTTCTTTATTTCAGCACTTTCCAATAATGTGTTTTCCCGTGTCGTTGCGCCGTCGGCTGGTGCTGACCCGGCTCTCCGGCAGCGGTTGTGCCAGCTTGTTGAGGGTTCCAAGTGGAATTATGCTGTGTTTTGGCAGGTTGCTGGCTTGAAATCTGGTGGTTCAGCCTTGGTTTGGGGTGATGGGCATTGCAGTGATCCCAAAGGGGAGAGGAATGGAGTTGGGAAGGAGGATGAACAGGAGGTGAGAAAGAAGGTACTGCAGAAGCTTGATGCTTGCTTTGGTGGGTCTCTGTTGAAAGATGCTAATCATGTGAGATTGGACAGGGTTTCGGAGTTGCTCATGTTTTACTTATCCTCGATGTGCTATATATTTGGTTTTGATTCGCTGTGTGGCCCTGGCAGTTCGTTCAAGTCCGGTAAATTTATTTGGGCTTCTGATGCTGCTGGTTGTTTGAACCAATTAGAATCTAGATCGTTTCTGGGGAAATTGGCTGGTCTTCACACTGTTGTTTTCGTTCCTCTGAAGTCTGGAGTGGTGGAGCTTGGTTCGTTTGAAATGGTGCCTGAAGAGCAGGGTGTTGTGGAAATGGTCAGGACAGCATTTGGGGAATCCAGTCCTGGACAGGCAAAGGTGTTTCCAAAGATTTTTGGGCATGAGTTAAGCCTGGGGGATACAAAATCTCAGTCTATAACTATTAGTTTCTCCCCAAAGGTGGAAGATGATCCGGGTTTCACTTCAGACTCCTATGAAGTTCAAGCACTAGGGGTGAACCATGCTTATGGAAATTCTTCCAATGGGACTTTAGGTGACGGTAATGAAGGAACATTGTTTCCTCAATTGAATCAAATGATGGCTGGGAATTTTAATGCTCAAGCAAGGGTTCCTTGTCTAGATCTCGGTAATGAAGACTCATCATCAATTCATGCAGATGAGCGGAAGCCCAAAAAAAGAGGTAGGAAACCTGCCAATGGGAGAGAGGAGCCGCTGAACCATGTTGAAGCTGAGAGACAAAGACGTGAGAAGCTTAATCAGAGGTTTTATGCCTTGAGAGCTGTTGTCCCTAATATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTTATCACTGATCTGCAGATGAAGATCAAGGTGTTGGAAGCTGAGAAGAACATGGGTAACAATAAGGACCAAAAATTGTCATTGCCAGATATGGATTTTCAGGAAAGAGAGGATGACACAGTTGTGACAGTGAGATGCCCCTTAGATATTCACCCTGTTTCGAATGTTGTTAAAACGTTCAGGGAGCATCAAATTGTGGCTCAAGACTCTAATGTTTCAACTGCAGATGATAAAATAATTCATACATTCTCCATAAGAACTGAGGGAGGGGAGGCTGCTGCTATACAGTTGAAAGAAAAGCTTGAAGCATCCCTATCCAAAAGTTGA 1515 0.4515 MVGEKFCVSEDDKGVLESVLGAEAVAFFISALSNNVFSRVVAPSAGADPALRQRLCQLVEGSKWNYAVFWQVAGLKSGGSALVWGDGHCSDPKGERNGVGKEDEQEVRKKVLQKLDACFGGSLLKDANHVRLDRVSELLMFYLSSMCYIFGFDSLCGPGSSFKSGKFIWASDAAGCLNQLESRSFLGKLAGLHTVVFVPLKSGVVELGSFEMVPEEQGVVEMVRTAFGESSPGQAKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSYEVQALGVNHAYGNSSNGTLGDGNEGTLFPQLNQMMAGNFNAQARVPCLDLGNEDSSSIHADERKPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMGNNKDQKLSLPDMDFQEREDDTVVTVRCPLDIHPVSNVVKTFREHQIVAQDSNVSTADDKIIHTFSIRTEGGEAAAIQLKEKLEASLSKS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0288 504 SMART finulus 358 407 IPR011598 GO:0046983
Gso10g0288 504 MobiDBLite consensus disorder prediction 325 363 - -
Gso10g0288 504 CDD ACT_UUR-ACR-like 436 504 - -
Gso10g0288 504 MobiDBLite consensus disorder prediction 330 363 - -
Gso10g0288 504 Coils Coil 398 418 - -
Gso10g0288 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Gso10g0288 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 418 IPR036638 GO:0046983
Gso10g0288 504 Gene3D - 345 417 IPR036638 GO:0046983
Gso10g0288 504 PANTHER TRANSCRIPTION FACTOR BHLH3 3 503 - -
Gso10g0288 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Gso10g0288 504 CDD bHLH_AtAIB_like 349 427 - -
Gso10g0288 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Gso10g0288 504 PANTHER MYC 3 503 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0288 Gso-Chr10 3050017 3052304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0288 2 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.451 6.79e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g0288 bHLH-MYC_N 2.5e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0288 - - gmx:100819968 1003.82