Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0281 ATGTCTCGTATGTTTGTGGATAAGTGGGGTGGTTTTTTAGTATTCTGGTGTTCCTTGGTTTGGTTTCTTTTTTCTTCCCTTTTTTTTATAAATTTTTTAGAGGCTAACATGGAGGAGGTTGAGCAAGCTAATAGAGTAGCTGTTGAAAGCTGCCATAGGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAATGGTGGAAACCGGTGAAACTGTGGTGAGGTTCAAGAAGGTTGTTTCCATGCTTCACAATGGTTTGGGTCATGCAAGAGTGAGGAAACTTAAAAACCCTCAAATCCCCTCTTCCCACCAAAGCATCTTCTTAGACAACCCCAATTGCAAAACCTTAACCAACAACAACAACAACAACCATCACTCAAAAAAAAATCTATACTTTCCCCAAACCAGCTACCCTGACAATTCAGTTCAGGAACATGGTTCAACCATTAAGAATTCTCTCTCTCTTGGACAACCCTCTTTGGAATTGAGCTCCAATGGGAAAAGTCCTCTTCACCTCACACAGCAGGGTTCATCAAATCACTATCACTTCTTTCAGCAGCAGCAACAGCAAAGGTTGTTGCAGCAGCAGCAGCAACAACAACAAATCAAGCATCAAGCTGAAATGTTGTTCCGAAGGAACAATAGTGGCATAAACCTGAATTTTGACAGCACTAGCTGCACACCAACAATGTCATCCACTAAGTCTTTTATTTCTTCCTTGAGCATAGATGGAAGTGTGGCTAACTTGGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCGCAACAGCCTAAGAGAAAATGTTCTGCCAGAGGCGATGAGGGAAGCTTGAAATGTGGGAGCAGTGCTAGATGTCATTGCTCTAAGAAGAGGAAACATAGAGTGAAGAGGGCAATTAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATCCCTCCTGATGATTATTCGTGGAGGAAGTATGGACAGAAGCCAATCAAGGGCTCTCCTCACCCTAGGGGATATTACAAGTGCAGCAGCATGAGAGGGTGTCCTGCAAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTACCATGCTAATTGTCACCTATGAAGGTGAACATAACCACCCCAAGTTACCAACACAATCTGCAAATGCATGA 1179 0.4326 MSRMFVDKWGGFLVFWCSLVWFLFSSLFFINFLEANMEEVEQANRVAVESCHRVLSLLSQPRDQVQHRNLMVETGETVVRFKKVVSMLHNGLGHARVRKLKNPQIPSSHQSIFLDNPNCKTLTNNNNNNHHSKKNLYFPQTSYPDNSVQEHGSTIKNSLSLGQPSLELSSNGKSPLHLTQQGSSNHYHFFQQQQQQRLLQQQQQQQQIKHQAEMLFRRNNSGINLNFDSTSCTPTMSSTKSFISSLSIDGSVANLDGSAFHLIGAPHSSDQNSQQPKRKCSARGDEGSLKCGSSARCHCSKKRKHRVKRAIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSANA* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0281 392 Pfam Plant zinc cluster domain 277 322 IPR018872 -
Gso10g0281 392 ProSiteProfiles WRKY domain profile. 319 385 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso10g0281 392 SUPERFAMILY WRKY DNA-binding domain 322 384 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso10g0281 392 Pfam WRKY DNA -binding domain 326 383 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso10g0281 392 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 38 391 IPR044810 GO:0003700
Gso10g0281 392 Gene3D WRKY domain 310 386 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso10g0281 392 Coils Coil 30 50 - -
Gso10g0281 392 SMART WRKY_cls 324 384 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso10g0281 392 MobiDBLite consensus disorder prediction 108 174 - -
Gso10g0281 392 MobiDBLite consensus disorder prediction 264 286 - -
Gso10g0281 392 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 38 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0281 Gso-Chr10 2964915 2967700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0281 37 389 WRKY Transcription Factor Family AT2G30590 54.756 2.39e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso10g0281 WRKY 5.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0281 - - gmx:100792310 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1166 2 14591753 14594617 Gso10g0281 10 2964915 2967700 GST