Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0277 ATGAAGATGAAGAGGTTGGTGAAAGTGAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTCTGCAATAAGTTCCTCAAAGAAGCCACTGCTATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTACGACAAAATTGCAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTCGAGAAAATGAGGCCAGATAACATTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAAAAAAAGAAAGGAGAAGGCACCTGTATCTGTCTCCTCAGCACTATTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATGTACACAGTCAACCATGACAGGAAGAAGAACAAAACCTGCAAGAAAGGCTAGTGGCCTGCAGGGATCTAGTTTCTCCATTGAGAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCACCAAGATAATTCATGCTCGCCTGACACTTCAAACAAGTCTGCTAAGAATGGTGGGCAGAGTTTGTCACCTTGTAAAAATAGCCAATCCATATGCAATAGAGAACCACAGAATGGTGCTGAACCACACGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGCCTTTTAAGTCTAATGTGCAAGCATCTGATGCTAAACTAGAATCCATGAAAGTGACTGACAGTGATGCTAAAGTGCTGAAAGCCAAAATTAAGGAAAAGAAGCGCAAGGCAAAAGTCGAAGATGAAAAGATTATCACTGATCATGTCTCTTCTGATACAGCAAAACCCAACAAATTGCGAAGAGTTCGCCCAAGAAAGGAACCTGTTTTTGGAGAATCTAGAATATCACCTCAGGCTGTTCTGGATGCTACTGACAGAAATCTCTTATGGAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCGCAAATTCCTTCAAATTATGTAAGAATAAAGAATGGAAGCATACCTGTCTCGTTTATCCAAAAATTATTAATGAAGAAACTAGGCCTGAATAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCAGTGCTTCCTTCACTGCAGGTGCAAAACTTGGTTGACTCATGGCTTGATATGGCGGCTTCAGGACATAGAATTCCAGCAACCATTGGATCCTCGGGGAAAGATTTTGTCATGATCCTAACCTATGGTCGGAAGGTCCTACACCCTTGA 1290 0.4132 MKMKRLVKVKRDAIAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKIADEELENCPVCNIDLGIVPLEKMRPDNILQDLRNKIFPFKKRKEKAPVSVSSALLPARRKERSLSSLVVSTPRVCTQSTMTGRRTKPARKASGLQGSSFSIEKLIKKEEELLEDHQDNSCSPDTSNKSAKNGGQSLSPCKNSQSICNREPQNGAEPHEAKWDLWKTLNYLAEAASRSKPFKSNVQASDAKLESMKVTDSDAKVLKAKIKEKKRKAKVEDEKIITDHVSSDTAKPNKLRRVRPRKEPVFGESRISPQAVLDATDRNLLWNDSIWFSLAASENQEGDAPLPQIPSNYVRIKNGSIPVSFIQKLLMKKLGLNSEDEVEIKCMGHPVLPSLQVQNLVDSWLDMAASGHRIPATIGSSGKDFVMILTYGRKVLHP* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0277 429 Coils Coil 250 270 - -
Gso10g0277 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Gso10g0277 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Gso10g0277 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 IPR044807 GO:0004842
Gso10g0277 429 SUPERFAMILY RING/U-box 15 85 - -
Gso10g0277 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 - -
Gso10g0277 429 MobiDBLite consensus disorder prediction 124 144 - -
Gso10g0277 429 MobiDBLite consensus disorder prediction 161 204 - -
Gso10g0277 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Gso10g0277 429 MobiDBLite consensus disorder prediction 167 199 - -
Gso10g0277 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 103 IPR013083 -
Gso10g0277 429 SMART ring_2 20 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0277 Gso-Chr10 2916537 2922450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0277 1 348 C3H Transcription Factor Family AT2G30580 48.997 9.23e-101 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0277 K16277 - gmx:100778462 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1171 2 14623345 14629194 Gso10g0277 10 2916537 2922450 GST
Gso19g1345 19 42153291 42159277 Gso10g0277 10 2916537 2922450 PCT
Gso3g1343 3 39326046 39331508 Gso10g0277 10 2916537 2922450 PCT
Gso10g0277 10 2916537 2922450 Gso19g1345 19 42153291 42159277 PCT
Gso10g0277 10 2916537 2922450 Gso3g1343 3 39326046 39331508 PCT