Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0272 ATGGTGTTTGAGGAAACTGAGCTGAGGCTTGGACTGAGACTAGGACTCCCTGGAAATGGAGCCGCGCCAACAACTGAAGCTGCTGCGGAATTAGGAGTGAGGAAGAGAGGGTTCTCTGAAACTGAAACCGATGAAACAACCTCCGTTGATTTGATGCTTAACCTCTCTCCCAAGGAAGCTTCTGCTGCTGCTACTACTGATGGAGCAGATCCACGTGAGAATCCAAAGACTTCGCCGAAGGAGAAGAATCTTCCTCTTCTCGATCCCGCAAAGCCTCCTGCCAAGGCGCAAGTGGTGGGATGGCCACCTGTAAGGTCTTTCCGGAAGAACATGTTTGCAGCCCAAAAGAGCAGCGGCGGAGAGGAAAGCGAGAAGAACAGCCCTAATGCAAGCTTTGTCAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTTGACTTGAAGATGTACAAGAGTTACCCTGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTGGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCCGACTATGTCCCGACCTATGAAGACAGGGATGGCGACTGGATGCTTGTCGGTGATGTGCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAG 747 0.494 MVFEETELRLGLRLGLPGNGAAPTTEAAAELGVRKRGFSETETDETTSVDLMLNLSPKEASAAATTDGADPRENPKTSPKEKNLPLLDPAKPPAKAQVVGWPPVRSFRKNMFAAQKSSGGEESEKNSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDYVPTYEDRDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0272 248 ProSiteProfiles PB1 domain profile. 130 230 IPR000270 GO:0005515
Gso10g0272 248 Pfam AUX/IAA family 11 239 IPR033389 -
Gso10g0272 248 Gene3D - 124 242 - -
Gso10g0272 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 241 IPR003311 GO:0005634|GO:0006355
Gso10g0272 248 PANTHER AUXIN-INDUCED PROTEIN AUX28 1 241 - -
Gso10g0272 248 SUPERFAMILY CAD & PB1 domains 125 229 - -
Gso10g0272 248 MobiDBLite consensus disorder prediction 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0272 Gso-Chr10 2877143 2880298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0272 122 233 B3 DNA Binding Superfamily AT3G61830 33.929 8.79e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso10g0272 AUX_IAA 5.1e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0272 K14484 - gmx:100803065 458.373