Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0271 ATGGGAAAGTACGAAAAAGAGCTTAATCTCGAGGCTACAGAGTTGAGATTGGGGTTGCCTGGAAGCGATGAGCCTGGGAAACGTTCTATTGTTAGAAGCAATAAGAGATCTTCAACAGAAGCAAGCGAGGAAGAGTGCATAAGCAAGGGCAACATGAATTCTAATGGTTCTGATATCACAAGTGATGACCAAGACAACCTTGTGCCACCTGCAAAAGCACAAGTAGTGGGATGGCCACCGGTTCGATCATATAGGAAGAATACTCTACAACAAAAGAAAGAGGAACAGGGTGAAGGGTCTGGGATGTACGTGAAAGTTAGCATGGCAGGTGCACCTTACTTGAGGAAGATAGATCTAAATGTTTACAAGAGCTACCCAGAACTTCTCAAGGCCTTGGGAAATATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAGGATGGGGATTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTGTCATCCTGCAAGAGACTGAGAATTATGAAAGCATCAGAAGCAAAGGGGTTGGGTTGTTTTTGA 594 0.436 MGKYEKELNLEATELRLGLPGSDEPGKRSIVRSNKRSSTEASEEECISKGNMNSNGSDITSDDQDNLVPPAKAQVVGWPPVRSYRKNTLQQKKEEQGEGSGMYVKVSMAGAPYLRKIDLNVYKSYPELLKALGNMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKASEAKGLGCF* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0271 197 MobiDBLite consensus disorder prediction 28 43 - -
Gso10g0271 197 MobiDBLite consensus disorder prediction 15 66 - -
Gso10g0271 197 ProSiteProfiles PB1 domain profile. 101 188 IPR000270 GO:0005515
Gso10g0271 197 SUPERFAMILY CAD & PB1 domains 96 187 - -
Gso10g0271 197 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 195 IPR003311 GO:0005634|GO:0006355
Gso10g0271 197 Pfam AUX/IAA family 13 195 IPR033389 -
Gso10g0271 197 Gene3D - 95 197 - -
Gso10g0271 197 MobiDBLite consensus disorder prediction 44 64 - -
Gso10g0271 197 PANTHER AUXIN-INDUCED PROTEIN 3 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0271 Gso-Chr10 2860778 2862540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0271 92 194 B3 DNA Binding Superfamily AT2G46530 36.893 3.42e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso10g0271 AUX_IAA 1.3e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0271 K14484 - gmx:100799875 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1181 2 14725381 14726978 Gso10g0271 10 2860778 2862540 GST
Gso19g1338 19 42088395 42089735 Gso10g0271 10 2860778 2862540 PCT
Gso3g1335 3 39247876 39249299 Gso10g0271 10 2860778 2862540 PCT
Gso10g0271 10 2860778 2862540 Gso19g1338 19 42088395 42089735 PCT
Gso10g0271 10 2860778 2862540 Gso3g1335 3 39247876 39249299 PCT