Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0258 ATGTTCCCTGCAGTTATGTCCAATTCCAATTCCTGGTCCGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCACTGGACTCAATCACGTTGTCACAACAACCATTTCTCCACAACAACCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCTGACCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACTCTTCTAGCTACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAACCTTCAGCTTCATAGGAGAGGGCATAACCTCCCATGGAAGCTGAAGCAAAGGAGCAACAAAGACGTGAAAAAGAAGGCATATGTTTGCCCTGAGCCTTCATGCGTTCACCACAACCCTTCAAGGGCTTTGGGGGACCTCACAGGAATTAAGAAACACTATTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCCAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTCTCAGCAAACCAATTAGCCACCAACACCACCACAAATCCATTAGTTCACTCCCTCTTCCTTCTCCCAACCCAACAACGCAACAACAATAACAACATCAACTTCATCAATCCCTGGGACCCAAACCCTAACCCTAGCAACCTCACCACTCTCCACAATAACAACATCAAACCTGAATCTCACAACTTCCACATCCCCAACACCAGCACCAACAACAACAACAACATTTCCTCTTCATTACTTCATCATCATCAGCAACCCAACAAGAGAATAATAACCTCACCCTACCGTGACCTCCACGTGAGAACACAACCCCACTCCAACGCTGCCACGTCAGCACACCTCTCAGCCACTGCGCTGCTGCAGAAGGCCGCGACCGTCGGTGCCGCCGCCATCACGGGCCCCACTCTCATGACTCAGCTCAGCATGGCGGAGTTAGGAGCCGTGTCAACTCAGCTCGACTCGGTGCCGATGACGGTGCCGCTGCCGCCCGATCAACGCTACATGAACATGAGAGGCCTCAAGAATAATAACAATGACGGTCTCACGAGGGACTTTCTCGGTCTCACCAACGGCAGCGCGGTGGACGTTAGCATCGACGTCAAGGATATGCTAACGTTCACCGCGGGGAGCATAGAGTACAACCATCGCCACCAGCAACAACAATCCTACGAGCACCATCACAGTCATAATAACTTGCTTTTCAAGCCCCAACAAGGTTTTGGATTCCTTGGGACAACCACTGGCCCCGAATCCTGGGGAAATTGTGAGTAA 1392 0.4885 MFPAVMSNSNSWSEEATVSCGTRITGLNHVVTTTISPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATNTTTNPLVHSLFLLPTQQRNNNNNINFINPWDPNPNPSNLTTLHNNNIKPESHNFHIPNTSTNNNNNISSSLLHHHQQPNKRIITSPYRDLHVRTQPHSNAATSAHLSATALLQKAATVGAAAITGPTLMTQLSMAELGAVSTQLDSVPMTVPLPPDQRYMNMRGLKNNNNDGLTRDFLGLTNGSAVDVSIDVKDMLTFTAGSIEYNHRHQQQQSYEHHHSHNNLLFKPQQGFGFLGTTTGPESWGNCE* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0258 463 Gene3D Classic Zinc Finger 142 207 - -
Gso10g0258 463 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Gso10g0258 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Gso10g0258 463 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 433 - -
Gso10g0258 463 Gene3D Classic Zinc Finger 52 121 - -
Gso10g0258 463 MobiDBLite consensus disorder prediction 36 56 - -
Gso10g0258 463 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 433 - -
Gso10g0258 463 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Gso10g0258 463 SMART c2h2final6 149 169 IPR013087 -
Gso10g0258 463 SMART c2h2final6 114 144 IPR013087 -
Gso10g0258 463 SMART c2h2final6 73 95 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0258 Gso-Chr10 2681722 2686333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0258 17 432 IDZ Gene Family AT4G02670 49.652 4.22e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0258 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0258 K25870 - gmx:100812496 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1194 2 14903903 14908172 Gso10g0258 10 2681722 2686333 GST
Gso10g0258 10 2681722 2686333 Gso19g1325 19 41960413 41964780 PCT
Gso10g0258 10 2681722 2686333 Gso3g1325 3 39138617 39143265 PCT