Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso10g0257 | ATGAATTATATGTATCAAGTGAAAGAAGAATACTTAGAATCATCACCATCATCATCATATCAATTAGGTGGTGAATTTCCAGCAAAGCCAATTGAAGGACTTCATGACACGGGACCCCCGCCATTCCTGACCAAAACTTTTGATGTTGTGGATGATCCTGTTACCAATCATGTAGTTTCTTGGAGCAGAGATGGCACAAGCTTTGTGGTTTGGGATCCAAATACCTTCTCTACAAGTCTTCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTATGGTTTTAGAAAAATTGATCCAGACAAATGGGAGTTTGCAAATGAAGGATTCATCAGAGGGCACAGGCACTTGTTAAGAAACATAAGGAGAAGGAAGGCACCTTCCCAACTAACACAAGGTCACCACTGTGTTGAGGTTGGACGTTTTGACTTAGACAAGGAGATTGATCGTTTGAGGCATGACAAGCTGGTGTTGCTTATGGAGCTTGTGAATCTAAGAAAGCAGCAACAGAAAGCCAGAATGTACATTCAGGAGATGGAGCAAAGGTTACAAGGGACAGAAATCAAGCAGAAACAAATGATGGCATTCTTAGCTAGAGCTATAAAAAATCCAACCTTCATACACCAACTCCTTCAGAAAGAGAAGAGTAAGGAGCTTGAAGAAGCTTTCACCAAAAAGAGAAGGCAAATTGAGCAAGGAGCTAGAGGGTTTGGAGAATCAAGCAGTGTTAAAGTTGAGGCTTTAGAATTTGGAGATAGTGAATTTGGAATATCAGAGTTGGAAATGTTAGCTAGGGAAATGCAAGGTTTTGGAAAGGGAGGGATAGATCGGGAGGTAGGACCTGAGGCACTAGAATCACAAGAGAGGCTGGATAGAGTACTTGATGAAGAGTTTTGGGAAGAACTATTGTTTAGTGAGAAATTTGAGGGTCGATTAGATATTCCAACTGCTGAAGATAAAGATGAAGATGTTATCAAAGTGTTGGCCAATCAACTTGATCTTTTGGATTCAAGTCATTAA | 1041 | 0.4035 | MNYMYQVKEEYLESSPSSSYQLGGEFPAKPIEGLHDTGPPPFLTKTFDVVDDPVTNHVVSWSRDGTSFVVWDPNTFSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFIRGHRHLLRNIRRRKAPSQLTQGHHCVEVGRFDLDKEIDRLRHDKLVLLMELVNLRKQQQKARMYIQEMEQRLQGTEIKQKQMMAFLARAIKNPTFIHQLLQKEKSKELEEAFTKKRRQIEQGARGFGESSSVKVEALEFGDSEFGISELEMLAREMQGFGKGGIDREVGPEALESQERLDRVLDEEFWEELLFSEKFEGRLDIPTAEDKDEDVIKVLANQLDLLDSSH* | 347 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso10g0257 | 346 | Gene3D | - | 34 | 132 | IPR036388 | - | |
Gso10g0257 | 346 | SUPERFAMILY | "Winged helix" DNA-binding domain | 38 | 131 | IPR036390 | - | |
Gso10g0257 | 346 | PANTHER | HEAT STRESS TRANSCRIPTION FACTOR A-6B | 17 | 334 | - | - | |
Gso10g0257 | 346 | PRINTS | Heat shock factor (HSF) domain signature | 42 | 65 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g0257 | 346 | PRINTS | Heat shock factor (HSF) domain signature | 80 | 92 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g0257 | 346 | PRINTS | Heat shock factor (HSF) domain signature | 93 | 105 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g0257 | 346 | Coils | Coil | 169 | 189 | - | - | |
Gso10g0257 | 346 | ProSitePatterns | HSF-type DNA-binding domain signature. | 81 | 105 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g0257 | 346 | SMART | hsfneu3 | 38 | 131 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g0257 | 346 | Pfam | HSF-type DNA-binding | 42 | 131 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g0257 | 346 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 17 | 334 | IPR027725 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso10g0257 | Gso-Chr10 | 2669927 | 2672600 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso10g0257 | 29 | 345 | HSF | AT3G22830 | 49.451 | 4.81e-110 | 325 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Gso10g0257 | HSF_DNA-bind | 2.6e-32 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso10g0257 | K09419 | - | gmx:100811945 | 664.455 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso19g1324 | 19 | 41945445 | 41948350 | Gso10g0257 | 10 | 2669927 | 2672600 | PCT | |
Gso3g1324 | 3 | 39126975 | 39129716 | Gso10g0257 | 10 | 2669927 | 2672600 | PCT | |
Gso10g0257 | 10 | 2669927 | 2672600 | Gso19g1324 | 19 | 41945445 | 41948350 | PCT | |
Gso10g0257 | 10 | 2669927 | 2672600 | Gso3g1324 | 3 | 39126975 | 39129716 | PCT |