Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0257 ATGAATTATATGTATCAAGTGAAAGAAGAATACTTAGAATCATCACCATCATCATCATATCAATTAGGTGGTGAATTTCCAGCAAAGCCAATTGAAGGACTTCATGACACGGGACCCCCGCCATTCCTGACCAAAACTTTTGATGTTGTGGATGATCCTGTTACCAATCATGTAGTTTCTTGGAGCAGAGATGGCACAAGCTTTGTGGTTTGGGATCCAAATACCTTCTCTACAAGTCTTCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTATGGTTTTAGAAAAATTGATCCAGACAAATGGGAGTTTGCAAATGAAGGATTCATCAGAGGGCACAGGCACTTGTTAAGAAACATAAGGAGAAGGAAGGCACCTTCCCAACTAACACAAGGTCACCACTGTGTTGAGGTTGGACGTTTTGACTTAGACAAGGAGATTGATCGTTTGAGGCATGACAAGCTGGTGTTGCTTATGGAGCTTGTGAATCTAAGAAAGCAGCAACAGAAAGCCAGAATGTACATTCAGGAGATGGAGCAAAGGTTACAAGGGACAGAAATCAAGCAGAAACAAATGATGGCATTCTTAGCTAGAGCTATAAAAAATCCAACCTTCATACACCAACTCCTTCAGAAAGAGAAGAGTAAGGAGCTTGAAGAAGCTTTCACCAAAAAGAGAAGGCAAATTGAGCAAGGAGCTAGAGGGTTTGGAGAATCAAGCAGTGTTAAAGTTGAGGCTTTAGAATTTGGAGATAGTGAATTTGGAATATCAGAGTTGGAAATGTTAGCTAGGGAAATGCAAGGTTTTGGAAAGGGAGGGATAGATCGGGAGGTAGGACCTGAGGCACTAGAATCACAAGAGAGGCTGGATAGAGTACTTGATGAAGAGTTTTGGGAAGAACTATTGTTTAGTGAGAAATTTGAGGGTCGATTAGATATTCCAACTGCTGAAGATAAAGATGAAGATGTTATCAAAGTGTTGGCCAATCAACTTGATCTTTTGGATTCAAGTCATTAA 1041 0.4035 MNYMYQVKEEYLESSPSSSYQLGGEFPAKPIEGLHDTGPPPFLTKTFDVVDDPVTNHVVSWSRDGTSFVVWDPNTFSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFIRGHRHLLRNIRRRKAPSQLTQGHHCVEVGRFDLDKEIDRLRHDKLVLLMELVNLRKQQQKARMYIQEMEQRLQGTEIKQKQMMAFLARAIKNPTFIHQLLQKEKSKELEEAFTKKRRQIEQGARGFGESSSVKVEALEFGDSEFGISELEMLAREMQGFGKGGIDREVGPEALESQERLDRVLDEEFWEELLFSEKFEGRLDIPTAEDKDEDVIKVLANQLDLLDSSH* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0257 346 Gene3D - 34 132 IPR036388 -
Gso10g0257 346 SUPERFAMILY "Winged helix" DNA-binding domain 38 131 IPR036390 -
Gso10g0257 346 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 17 334 - -
Gso10g0257 346 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0257 346 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0257 346 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0257 346 Coils Coil 169 189 - -
Gso10g0257 346 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0257 346 SMART hsfneu3 38 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0257 346 Pfam HSF-type DNA-binding 42 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0257 346 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 334 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0257 Gso-Chr10 2669927 2672600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0257 29 345 HSF AT3G22830 49.451 4.81e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso10g0257 HSF_DNA-bind 2.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0257 K09419 - gmx:100811945 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1324 19 41945445 41948350 Gso10g0257 10 2669927 2672600 PCT
Gso3g1324 3 39126975 39129716 Gso10g0257 10 2669927 2672600 PCT
Gso10g0257 10 2669927 2672600 Gso19g1324 19 41945445 41948350 PCT
Gso10g0257 10 2669927 2672600 Gso3g1324 3 39126975 39129716 PCT