Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0225 ATGGCTGCGCCACTAGGCACTAGCCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCAGTGGACTTATAGTCTCTTCTGGCAACTTTGTCCACAACAAGGGATTCTGGTTTGGGGTGATGGTTACTACAATGGAGCAATTAAAACACGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAAGAGGCTTCTCTCCAAAGAAGTCAGCAACTTAGAGAACTCTATGAATCACTGTCCGCCGGAGAGACAAACCCGCCTTGTCGCCGGCCTTGTGCCGCCTTGTCGCCTGAGGACTTAACAGAATCCGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCACCTGGTGTTGGGTTGCCTGGAAAGGCATATGCGAGGAGGCAGCATCTATGGCTCACGGGTGCAAACGAGGTGGACAGCAAAACGTTTTCACGAGCTATTCTAGCCAAGAGTGCTCGCATACAGACCGTGGTGTGCATTCCTTTATTGGACGGTGTGGTTGAGTTTGGCACAATGGATAAGGTTCAAGAAGACCTCAGCTTCATCCAACACGTGGAGACCTTCTTCATAGACCACCTCAACCCTCTGCCACCGAAGCCTGCCTTGTCGGAGCACTCAACCTCAAACCCCGCCTCCTCCTCTGAACACATCCCCGCCGTCATGTATACCGTCGTGGATCCACTTGCCGCCAATCCCAACCTAAATGATGACATGGATGAGGATATTGAGGAGGAAGAGGAGGAGGAAGAGGAAGATGAGGAGCCGGAATCTGGTTCCGAAGACAAAGCCGGATACGGCATCGCTCGCCAAACTCCAACACCAGCCATGGCGGCAGAGCCCAGCGAGCTGATACAACTAGAGATGCCGGAGGACATCCGGCTTGGGTCTCCAAACGATGGGTCAAACAACTTAGACTCAGATTTTCACTTGCTGGCGGTGAGTCAGGGTGTTAACACAGCGGGGCAGGCTGAGTCAACTCGGAGGTGGGGCCTGAGTCAAAACCCCATGCAAGTTCAACTACCGACTTCAGCCCTTCATCCATTGGAAGACTTGACACAAGAGGACACTCACTACTCTCAAACAGTGTCCAACATCCTCCAAAACCAGTTCACACGGTGGCCAGCCTCACCCTCCTCCGTTGGATACGTCACATACTCCACGCAATCAGCATTCGCAAAATGGAGCAGCCGCGCCAGCCACCACCACTTCCACCCGGCGGCGGCGGCGGACGGCACCAGCCAGTGCATCCTCAAGTACATCCTCTTCACGGTCCCGTACCTCCACGCCAAGAACCCCGGCGAGAGTTCTCCCCAAACCACCGCCGCGGATACCAAACTCCGCGGCAAGGGAGCGCCGCAGGAGGAGCTCAGCGCCAACCACGTGCTGGCCGAGCGCCGCCGTCGCGAGAAGCTGAACGAGAGGTTCATAATCCTGCGGTCGCTGGTCCCCTTCGTGACCAAAATGGACAAGGCGTCGATATTGGGAGACACCATCGAGTACGTGAAGCAGTTGCGGCGGAAGATCCAGGAGCTCGAGGCGCGTAACCGCCAGATGACGGAGGCGGAACAACGTTCCAAGCTCCCAGAGATAGCAGTTCAGAGAACAAGTAGCAGTTCGAGCAAGGAGCAACAGAGGAGTGGGGTGACAATGACGGAGAAGAGGAAGGTGAGGATCGTGGAAGGGGTGGTGGCGAAGGCGAAGGCGGTGGAGGCTGAGGCCACCACGTCGGTGCAAGTTTCGATCATAGAAAGCGACGCACTGTTGGAGATCGAGTGTCGTCACAAAGAAGGGTTGCTTCTGGACGTGATGCAGATGCTGAGGGAGGTGAGGATAGAAGTTATAGGGGTGCAGTCGTCGCTTAACAATGGGGTGTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAAAATGCAAACGGGAAGAAGGTCAGCATTGTGGAAGTGAAGAGGGCACTTAACCAAATTATACCCCATGCTGTTGACTAA 1989 0.5475 MAAPLGTSLQSMLQAAVQSVQWTYSLFWQLCPQQGILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPCRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHLWLTGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTMDKVQEDLSFIQHVETFFIDHLNPLPPKPALSEHSTSNPASSSEHIPAVMYTVVDPLAANPNLNDDMDEDIEEEEEEEEEDEEPESGSEDKAGYGIARQTPTPAMAAEPSELIQLEMPEDIRLGSPNDGSNNLDSDFHLLAVSQGVNTAGQAESTRRWGLSQNPMQVQLPTSALHPLEDLTQEDTHYSQTVSNILQNQFTRWPASPSSVGYVTYSTQSAFAKWSSRASHHHFHPAAAADGTSQCILKYILFTVPYLHAKNPGESSPQTTAADTKLRGKGAPQEELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRQMTEAEQRSKLPEIAVQRTSSSSSKEQQRSGVTMTEKRKVRIVEGVVAKAKAVEAEATTSVQVSIIESDALLEIECRHKEGLLLDVMQMLREVRIEVIGVQSSLNNGVFVAELRAKVKENANGKKVSIVEVKRALNQIIPHAVD* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0225 662 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 457 506 IPR011598 GO:0046983
Gso10g0225 662 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 459 523 IPR036638 GO:0046983
Gso10g0225 662 PANTHER TRANSCRIPTION FACTOR TT8 8 659 - -
Gso10g0225 662 Coils Coil 496 526 - -
Gso10g0225 662 Pfam Helix-loop-helix DNA-binding domain 460 507 IPR011598 GO:0046983
Gso10g0225 662 MobiDBLite consensus disorder prediction 531 548 - -
Gso10g0225 662 SMART finulus 463 512 IPR011598 GO:0046983
Gso10g0225 662 MobiDBLite consensus disorder prediction 231 277 - -
Gso10g0225 662 MobiDBLite consensus disorder prediction 518 552 - -
Gso10g0225 662 Gene3D - 456 531 IPR036638 GO:0046983
Gso10g0225 662 PANTHER TRANSCRIPTION FACTOR TT8 8 659 - -
Gso10g0225 662 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Gso10g0225 662 Coils Coil 233 253 - -
Gso10g0225 662 MobiDBLite consensus disorder prediction 434 454 - -
Gso10g0225 662 MobiDBLite consensus disorder prediction 238 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0225 Gso-Chr10 2340333 2350162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0225 295 659 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.669 9.28e-57 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g0225 bHLH-MYC_N 8.2e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0225 - - gmx:100807157 1232.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1291 19 41480380 41488788 Gso10g0225 10 2340333 2350162 PCT
Gso3g1290 3 38643700 38651715 Gso10g0225 10 2340333 2350162 PCT
Gso10g0225 10 2340333 2350162 Gso19g1291 19 41480380 41488788 PCT
Gso10g0225 10 2340333 2350162 Gso3g1290 3 38643700 38651715 PCT