Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0212 ATGATTCCTTGGGGTGGCCTCAGTTGCTGTTTGAGTGCTGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGGGATGCGGAAATTCTTAAATCCGTTACAAGGGTCAATCAGCTGAAGGAACTAGCTCAACTGTTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAAGAGTTAGCTCTGAAACCCCAATTAACTGCGAGTTCAGTGGTTTAAGAGGTGTAATAGTTGAAGAAACAGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCCGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGAGGTGCTTCTGGTTTTGCATTACCTGTTGGAATTGAGGCATTTGAAGAGTCGGGTCGGTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAGATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGATGATGTTGGCGCTATTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGGTGGTATAAGTATGCTTCTGTGGGCTTGACGGTGTTTGGTGCTTATCTGATAGCCAAGCATGCTATTCGGTACATATTGGAAAGACGGCGCCGCAGCGAACTTCAAAGAAGGGTTCTTGCTGCAGCTGCTAAGAAGTCGGGACAAAATAATGATGTTGAAAAGGCCGACAGCTTATCAGATGGTGCTAAAAAGGATCGCTTAATGCCAGATTTGTGTGTAATATGCCTTGAGCAGGAATATAATGCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGCTTGTTCTTCACACTTGACCAATTGTCCTCTCTGCCGGCGACAGATAGAGAAGGTTGTGAAGACTTTCCGTCATTGA 1020 0.448 MIPWGGLSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLIVTISGRVSSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTDRVHVVGARGASGFALPVGIEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGAIRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASVGLTVFGAYLIAKHAIRYILERRRRSELQRRVLAAAAKKSGQNNDVEKADSLSDGAKKDRLMPDLCVICLEQEYNAVFVPCGHMCCCTACSSHLTNCPLCRRQIEKVVKTFRH* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0212 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 338 IPR013083 -
Gso10g0212 339 SUPERFAMILY RING/U-box 291 333 - -
Gso10g0212 339 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Gso10g0212 339 PANTHER - 1 306 IPR044231 GO:0004842|GO:0016567
Gso10g0212 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
Gso10g0212 339 CDD RING-HC_LRSAM1 291 330 - -
Gso10g0212 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0212 Gso-Chr10 2206938 2213121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0212 1 266 C3H Transcription Factor Family AT1G63900 77.985 6.88e-154 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0212 K15688 - gmx:100803252 664.07