Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0193 ATGATGGCGGAGGGGAAGGAAGAGAGTAAATTTAGCGAGGAAAGCGTGAAGCTGTTCGTGGGTCAAGTGCCGAAGCGCATGGCGGAAGATGAAGTGCTTGCAATGTTCAAGGAGTTCGCTTTGGTTGACGAGGTCAACATCATCAGAGACAAAGCTAGTCGTGCCTCCCGAGGTTGTTGCTTTGTAATTTGTCCGTCCAGGGAAGAAGCGGATAAGGCGGTCAATGCTTGTCATAACAAGAAAACGCTCCCTGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGTGAATTGGAAAGATTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAATATTTCTGAAGATGAGGTCTCTGATCTTTTCTCAATGTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGATGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCCTTGCTGCTCTTGAGGCAATCAATGGAAAACATACAATGGAGGGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCAGATACTGAAAAGGAAAGGCTAGCTCGAAGGGCTCAAAAAGCACAGTCCCAAGTTTCTAACATGCCGCAGGCTGATCCTCAACATCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCCGGGGGTTATGGGCTCATGGCATACCGTTTTCCACCAATGCAGAATCAACCAGGTTTCCATAACATGAACATGAACCAAGTAAATGCAGTGAGGCCTGATCTTGGTCACAGTGTGAATCCTAGAAATTATCATGCGCCTCCTGCAAGTTACATTGGCCCTTATCCTGCTGTGCCAGGTGTACAGCATCCAATGGTATATCCCAGAAGAATTGTAAGTCCGAGGCCGATGAGTAGTTCTTCTGGTTCTGTTTCACCTGCAGGTGGGAATAGCAACTCTTCATCTTCAGGTGCCAGTAAAAGTTCCAGTGGTCAAATTGAAGGACCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGACGAAGAGCTCGCAACCACATTTCAACCGTTTGGTAGAGTTTTGAGTGCTAAAATTTTTGTCGATAAAGTAACAGGTGTAAGCAAATGTTTTGGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAATCTGCCATTAGTACGATGAATGGTTGTCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGATAACAAGCAGAGTAAGATTTACTGA 1290 0.4372 MMAEGKEESKFSEESVKLFVGQVPKRMAEDEVLAMFKEFALVDEVNIIRDKASRASRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEDEVSDLFSMYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHTMEGSSVPLVVKWADTEKERLARRAQKAQSQVSNMPQADPQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMAYRFPPMQNQPGFHNMNMNQVNAVRPDLGHSVNPRNYHAPPASYIGPYPAVPGVQHPMVYPRRIVSPRPMSSSSGSVSPAGGNSNSSSSGASKSSSGQIEGPPGANLFIYHIPQEYGDEELATTFQPFGRVLSAKIFVDKVTGVSKCFGFVSYDTPEAAQSAISTMNGCQLGGKKLKVQLKRDNKQSKIY* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0193 429 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 8 416 - -
Gso10g0193 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Gso10g0193 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 16 31 IPR002343 GO:0003723|GO:1990904
Gso10g0193 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 109 124 IPR002343 GO:0003723|GO:1990904
Gso10g0193 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 124 136 IPR002343 GO:0003723|GO:1990904
Gso10g0193 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Gso10g0193 429 Gene3D - 309 421 IPR012677 -
Gso10g0193 429 CDD RRM1_2_CELF1-6_like 17 93 - -
Gso10g0193 429 CDD RRM3_CELF1-6 346 418 - -
Gso10g0193 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Gso10g0193 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 416 IPR000504 GO:0003723
Gso10g0193 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 168 IPR000504 GO:0003723
Gso10g0193 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 82 IPR000504 GO:0003723
Gso10g0193 429 SUPERFAMILY RNA-binding domain, RBD 11 99 IPR035979 GO:0003676
Gso10g0193 429 PANTHER RNA BINDING PROTEIN 8 416 - -
Gso10g0193 429 CDD RRM1_2_CELF1-6_like 105 180 - -
Gso10g0193 429 SUPERFAMILY RNA-binding domain, RBD 104 424 IPR035979 GO:0003676
Gso10g0193 429 MobiDBLite consensus disorder prediction 303 338 - -
Gso10g0193 429 Gene3D - 3 100 IPR012677 -
Gso10g0193 429 Gene3D - 101 191 IPR012677 -
Gso10g0193 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 422 IPR000504 GO:0003723
Gso10g0193 429 MobiDBLite consensus disorder prediction 306 338 - -
Gso10g0193 429 SMART rrm1_1 345 418 IPR000504 GO:0003723
Gso10g0193 429 SMART rrm1_1 17 93 IPR000504 GO:0003723
Gso10g0193 429 SMART rrm1_1 105 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0193 Gso-Chr10 2019405 2023404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0193 344 428 Eukaryotic Initiation Factors Gene Family AT4G34110 34.118 1.29e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0193 K13207 - gmx:100796156 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1260 2 15628980 15633349 Gso10g0193 10 2019405 2023404 GST
Gso19g1725 19 46136461 46141172 Gso10g0193 10 2019405 2023404 PCT
Gso3g1758 3 43385976 43390892 Gso10g0193 10 2019405 2023404 PCT
Gso10g0193 10 2019405 2023404 Gso19g1725 19 46136461 46141172 PCT
Gso10g0193 10 2019405 2023404 Gso3g1758 3 43385976 43390892 PCT