Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0186 ATGATGAGTGGTTCTCCTTCTCCAAATTCAAAACAGAGAACATGCGACTATTGTGGGGACTTCACGGCTCTTCTGTATTGCAGTGCCGATTCTGCGAAGCTATGTTTCTTCTGTGACCGCAAAGTTCACTCCCCAAACCAGCTTTTCTCCAAGCACACGCGAGCGCAGCTCTGTGATTCGTGTGGAGATTCCCCTGCTTCGATGCTCTGTTCTGCAGAGAACTCTGTTCTTTGCCATAACTGTGACTGCGAAAAGCACAAACATTTGGCGTCTGAAGTGCACCAACGAAAACCCCTCGAGGGGTTCTCGGGGTGCCCTTCTGTGACTGAGTTGTTAACGATTCTTGGTGTTTCTGAAAAATCTCTGCTTTCAAATGAGGGGACTTCCCAGATTGATTACGACCTTTCGGATTTGCACGTGTGGAGTGCTCCTTCTGTTAACGGTCTTGAATATTTGATCACTTCCACAGCTTCTTCTCATAAGAATCGTAAGAGTGCGTTTGGGAGACACAAAGAAGAGATTCTTAGTCAACTCCGTGAGCTAATAAAGTTGGAGCCCGACTTGATTCATGGAGAAGTAGATGCTGAGCGACAAGGGCAATTTGGAAATTTGCCTACTGGCTTTGAACGTGACGTGGAGGCTAGTATGTTTCCTTCATATGAGGCAGGTGTGTTTTGTTGGCATGGAGAAAGCAGTGATCCTACAAATCAAATTGTTCCTTCCGATACGTCATCATTGAGAGATTTTGGCGAGGTAGTTTCAGCTGAAGATGGAAGTTTTACCATCCCTGGAACTGGAACTCAAGCCAATTTTAACAACGAAGGGAAACCATCAAACTCTTTTAACTCTGAAAACTTATCTCCTACTCCTAAAGCTACTCCATATGAGTTAACAAGTCATGAAAGAGATTCAGCATTATTGCGATACAGAGAGAAGAAGAAAACCAGAAGATATGACAAGCACATCAGATATGAATCACGAAAAGTTCGGGCAGAAAGCAGGATGAGAATTAAGGGTCGGTTTGTCAAAGATGAAACACAAAAATAA 1047 0.4384 MMSGSPSPNSKQRTCDYCGDFTALLYCSADSAKLCFFCDRKVHSPNQLFSKHTRAQLCDSCGDSPASMLCSAENSVLCHNCDCEKHKHLASEVHQRKPLEGFSGCPSVTELLTILGVSEKSLLSNEGTSQIDYDLSDLHVWSAPSVNGLEYLITSTASSHKNRKSAFGRHKEEILSQLRELIKLEPDLIHGEVDAERQGQFGNLPTGFERDVEASMFPSYEAGVFCWHGESSDPTNQIVPSDTSSLRDFGEVVSAEDGSFTIPGTGTQANFNNEGKPSNSFNSENLSPTPKATPYELTSHERDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRIKGRFVKDETQK* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0186 348 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Gso10g0186 348 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 10 345 - -
Gso10g0186 348 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Gso10g0186 348 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 10 345 - -
Gso10g0186 348 MobiDBLite consensus disorder prediction 260 294 - -
Gso10g0186 348 SMART bboxneu5 58 99 IPR000315 GO:0008270
Gso10g0186 348 SMART bboxneu5 10 57 IPR000315 GO:0008270
Gso10g0186 348 CDD Bbox1_BBX-like 15 57 - -
Gso10g0186 348 MobiDBLite consensus disorder prediction 257 298 - -
Gso10g0186 348 Pfam CCT motif 302 344 IPR010402 GO:0005515
Gso10g0186 348 ProSiteProfiles Zinc finger B-box type profile. 53 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0186 Gso-Chr10 1942905 1945795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0186 11 317 C2C2-CO-like Transcription Factor Family AT2G47890 36.957 1.61e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso10g0186 zf-B_box 3.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0186 - - gmx:100798117 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1269 2 15719366 15722347 Gso10g0186 10 1942905 1945795 GST
Gso19g1736 19 46250044 46253700 Gso10g0186 10 1942905 1945795 PCT
Gso3g1769 3 43492919 43496677 Gso10g0186 10 1942905 1945795 PCT
Gso10g0186 10 1942905 1945795 Gso19g1736 19 46250044 46253700 PCT
Gso10g0186 10 1942905 1945795 Gso3g1769 3 43492919 43496677 PCT