Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0176 ATGGGTGACAACATAGGCAAAGTCTTAGACAGAGAAGGCTTTAAGTACAACTTCACAGCTTCAGCAAGTGGCACATCTGCACAAGATGGGGTGATTAAGGAGCAAGATCGGTTGCTTCCAATAGCTAATGTGGGGCGCATCATGAAGCAAATCCTTCCTCCCAACGCCAAGATCTCAAAGGAAGCTAAAGAAACCATGCAAGAAAGTGTGTCCGAGTTCATTAGCTTTGTCACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTGAATGGTGACGATATTTGCTGGGCCCTTGCTACTTTAGGGTTTGATGACTACTCTGAGCCACTTAAAAGGTACTTGTATAAGTATAGGGAGATGGAGGGGGAGAGAGCAAATCAAAATAAGGGTAGCAATGGTTATGAAAACAACATTGCAAACATATAA 438 0.4429 MGDNIGKVLDREGFKYNFTASASGTSAQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYSEPLKRYLYKYREMEGERANQNKGSNGYENNIANI* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0176 145 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 139 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso10g0176 145 SUPERFAMILY Histone-fold 35 140 IPR009072 GO:0046982
Gso10g0176 145 Gene3D Histone, subunit A 27 143 IPR009072 GO:0046982
Gso10g0176 145 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Gso10g0176 145 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Gso10g0176 145 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Gso10g0176 145 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 16 139 - -
Gso10g0176 145 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0176 Gso-Chr10 1836170 1836964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0176 16 132 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.424 1.13e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso10g0176 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0176 K08065 - gmx:100796514 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1278 2 15831062 15831864 Gso10g0176 10 1836170 1836964 GST