Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0172 ATGGTCGAAACCAGACGCGGCGCCTCTTCTTCCAAGCGTTCTCTCTCTTCGCCTTCTTCTGCGTCCAACACCAAACGATCCAAGGTGTCTGAGGATTCCTCTGTGGCGGCTCCGGTCAACGAATCTGGAACCGGAAATGAATCTGGGGAACCGGAGCTACGACCCTCTGATCTGCCAGATACGGCGTCGTTGAAGGTCGCGGGTGTTTGTGATAAGTCTCCTTCTGAAGGCGAGGCTTTGGTGCCTCCACTGTGTGCAGGTGAAACTGCGGAGAAATCGAAGGTGGCTGGTCTTCCCCCAAGGAGCGTGAAGAAACGTGCTGCGAAATCGTGCCCCAAGACTGCATGGGGAAAGCTTCTCTCTCAGTGTTCTAAGACTCCTCATGTGTGCATGACTGAACCTTTCTTCACCGTTGGTCAAGGACGACATTGTAATTTATGGCTTAAAGATCCCACCATTGGTAGTGTTTTGTGCAAGCTGAGCCACATAGAGCGTGGAGGTTCATCGGGTGCATTACTGGAAATCACAGGGGGAAAAGGTTCTATTCACGTTAATGGAAAGACTTATAGAAAGAATGCCCGCCTAATTTTAAGTGGAGGTGATGAGGTTGTCTTTGGTTCTTCTGCCAAGTATGCTTATATCTTTCAGCAGCTGTCGAATAGTAATATTAGTACTGCTGATATAGCTTCTTCCGTGAGTATTTTGGAAGCCCAGAGTGCTCCATTAAATGGAATGCAAGTTGAAGCCAGATCTGGAGACCCTTCTGCTGTTGCTGGAGCATCTATATTGGCATCTTTATCTAATAATATTTGTAAAGAATTATCTCTCCTACCACCTGCTGCTAAAACTGGCAAGAATGTGCAGAACACTGACATTTCATCACTACATTCTGGCTGCGGGGATGATATCCCAGACAATGAAATGAATGATACCACCAATAATGCTGAACCAGCTGGAGATTTTTCTGCTGATAAAACTGTTCTTGCATCCTCTACCACTGTTAACGAAAATCCTAACCTTGACTCAGTGGAAGTCGATACCAATATTGATGCAAATGTTGGGAAGATGACTGCTGCTGCATATGAGTTGAGGCCATTACTGCGCATGCTTACTGGATCATGTCCTGAATTTGATTTAAGTGGTAGCATTTCCAAGATATTGGAAGGGCGAAGGGAATTAAGAGAACTTCTTAAAGATGTTGATACCCCAACAGTATTGGCATCAACCAAGCGGGAAGCATTTAAGGACATTTTACAGCAGAGAATTCTCATAGCTGAGAAGATTGATGTCTCATTTGAAACTTTTCCATATTATCTAAGTGATACTACAAAGAACGTCTTGATTGCTTCTACATTTATTCATTTGAAGTGCAATGGCTTTGGAAAATATGCTTCAGACCTCCCATCCGTGTCGCCACGAATATTGTTATCTGGTCCTGCAGGTTCAGAAATATACCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGACTACTAATTGTGGATTCTCTTTCACTGCCTGGTGGATCACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTATTGTGCTGAAAAACCATCTGTGTTTTCTAGGAAGAAAAATCTCCATACTGCCATGTTACAACATAAGAAACCAGCCTCTAGTGTTAATGCTGAAATTATTGGGGGACCCATGCTTATTTCTAGTGCATCATCAAAAGGCACTACTCTTAAAAAGGGTGATCGAGTAAAATTTATTGGTAGCTTTCCTTCTGCTGTCTCATCGTTACCAAATTATATTTCAAGGGGACCAAGCTATGGCTCCCGGGGCAAAGTTCTCCTAGCTTTTGAAGATAACGGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGTGGCCTTTGTGAAGATGACCGTGGGTTCTTCTGTTCTGCAAATCATTTACTACGAGTAGACGGCTCTGGAGGGGATGATCTTGACAAAGTTGCAATTAATGAAATCTTTGAGGTTGTCTCTAATCAGAGTAAAAGTGGTGCACTCGTGTTGTTCATTAAAGATATAGAGAAGGCAATGATTGGCAACTATGAAATTTTAAAAAGTAAATTTGAAAGCTTGCCACCAAATGTTGTGGTAGTTGGTTCTCACACCCAGTTGGATAATCGTAAGGAGAAGACTCAACCCGGCAGTCTTCTGTTTACCAAGTTTGGAAGCAATCAGACAGCACTGCTTGATCTTGCTTTTCCGGATAACTTTAGTAGACTGCATGATAGAAGCAAAGAAATCTCAAAAGTTATGAAGCAACTTAGTCGCCTTTTTCCAAACAAAGTGACCATACAGTTGCCTCAGGACGAGGCTTTACTCTCTGACTGGAAGCAGCAGTTAGATTGTGACATTGAAACTATGAAAGCTCAGTCCAATGTTGTCAGCATTCGCTTAGTTCTTGGCAGAATTGGATTGGATTGCCCTGACCTTGAGACTCTCTGCATCAAAGACCACACCCTAACGACTGAGAGTGTGGAGAAGATCATTGGATGGGCTATAAGTTACCATTTTATGCATTCATCTGAAGCTTCAATCAGATATTCTAAGCTTGTAATATCTGCAGAAAGCATTAAGTATGGACATAATATTCTACAGGGCATTCAAAATGAGAACAAGAACATGAAAAAATCACTTAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAACTACTTACTGATGTTATTCCACCGACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTTAAGGAAACCTTGAAGGAATTAGTCATGCTTCCTCTTCAGAGGCCTGAATTGTTTGGCAAAGGACAGCTGGCTAAGCCTTGCAAAGGAATATTGCTTTTTGGCCCTCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTTATTAACATTTCAATGTCCAGCATTACGTCCAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGAAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGAACAAAAGATAAAGAGCGTATACTTGTTCTTGCGGCTACAAATAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGACTTCCACGAAGATTGATGGTTAATTTGCCCGATGCTCCAAACAGAGAAAAAATTGTTAGTGTTATTTTAGCAAAAGAAGAATTGGCACCTGATGTTGATTTCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAGAATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGCAGTACCGACATTCGTCCCTTAAAGATGGAAGATTTTATATATGCACATGAGCAGGTTTGTGTTAGTGTATCATCGGAGTCAACAAACATGAATGAACTACTCCAATGGAACGACCTTTACGGAGAAGGTGGATCAAGAAAAATGAGATCTTTGAGCTATTTCATGTAA 3681 0.417 MVETRRGASSSKRSLSSPSSASNTKRSKVSEDSSVAAPVNESGTGNESGEPELRPSDLPDTASLKVAGVCDKSPSEGEALVPPLCAGETAEKSKVAGLPPRSVKKRAAKSCPKTAWGKLLSQCSKTPHVCMTEPFFTVGQGRHCNLWLKDPTIGSVLCKLSHIERGGSSGALLEITGGKGSIHVNGKTYRKNARLILSGGDEVVFGSSAKYAYIFQQLSNSNISTADIASSVSILEAQSAPLNGMQVEARSGDPSAVAGASILASLSNNICKELSLLPPAAKTGKNVQNTDISSLHSGCGDDIPDNEMNDTTNNAEPAGDFSADKTVLASSTTVNENPNLDSVEVDTNIDANVGKMTAAAYELRPLLRMLTGSCPEFDLSGSISKILEGRRELRELLKDVDTPTVLASTKREAFKDILQQRILIAEKIDVSFETFPYYLSDTTKNVLIASTFIHLKCNGFGKYASDLPSVSPRILLSGPAGSEIYQETLSKALVKHFGARLLIVDSLSLPGGSPSKEVDSAKESYCAEKPSVFSRKKNLHTAMLQHKKPASSVNAEIIGGPMLISSASSKGTTLKKGDRVKFIGSFPSAVSSLPNYISRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDGSGGDDLDKVAINEIFEVVSNQSKSGALVLFIKDIEKAMIGNYEILKSKFESLPPNVVVVGSHTQLDNRKEKTQPGSLLFTKFGSNQTALLDLAFPDNFSRLHDRSKEISKVMKQLSRLFPNKVTIQLPQDEALLSDWKQQLDCDIETMKAQSNVVSIRLVLGRIGLDCPDLETLCIKDHTLTTESVEKIIGWAISYHFMHSSEASIRYSKLVISAESIKYGHNILQGIQNENKNMKKSLKDVVTENEFEKKLLTDVIPPTDIGVTFDDIGALENVKETLKELVMLPLQRPELFGKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKIVSVILAKEELAPDVDFEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALTENQPLPQLCSSTDIRPLKMEDFIYAHEQVCVSVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM* 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0172 1226 MobiDBLite consensus disorder prediction 1 62 - -
Gso10g0172 1226 Coils Coil 882 902 - -
Gso10g0172 1226 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1226 - -
Gso10g0172 1226 CDD AAA 960 1093 - -
Gso10g0172 1226 Gene3D - 115 225 - -
Gso10g0172 1226 SUPERFAMILY SMAD/FHA domain 116 210 IPR008984 GO:0005515
Gso10g0172 1226 ProSitePatterns AAA-protein family signature. 1065 1084 IPR003960 GO:0005524|GO:0016887
Gso10g0172 1226 Gene3D - 1094 1188 - -
Gso10g0172 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 921 1200 IPR027417 -
Gso10g0172 1226 CDD FHA 141 216 IPR000253 GO:0005515
Gso10g0172 1226 Pfam AAA+ lid domain 1115 1151 IPR041569 -
Gso10g0172 1226 MobiDBLite consensus disorder prediction 1 49 - -
Gso10g0172 1226 Pfam ATPase family associated with various cellular activities (AAA) 962 1091 IPR003959 GO:0005524|GO:0016887
Gso10g0172 1226 Gene3D - 920 1200 IPR027417 -
Gso10g0172 1226 SMART AAA_5 958 1095 IPR003593 -
Gso10g0172 1226 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0172 Gso-Chr10 1768954 1784536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0172 957 1162 Calmodulin-binding Proteins AT3G56690 35.714 5.20e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0172 - - gmx:100794406 2366.65