Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0171 ATGGTCGAAACCAGACGCAGCAGCTCCTCCTCTTCCAAGCGCTCTCTCTCTTCGCCCTCTCCCCCCAACAACACCAAACGGTGCAAGGTGTCCGAGGATTCCTCATCCACCACCGTGCCTTCGGTTGCTCCGGTCAACGAATCTGGAACCGCTAATGAATCCGCGGAACCGGAGCTGATGCTCTCTGATCTGCCTGAAACGGCGTCGTTGAAGGCCGTCGATGGCTGTGTTGCGATGTCGCCCAATAAGTCTCCCTCTGCGCCCGTTGAAGGTGAGACCGCGGAGAAATCGAAGGGGGTGCTGATGGCGGCGGCGACGACGACGGGTGGTCGATCGAAGAAACAACGCCCTTCGAAATTGAGCCCCAAGGTTGCGTGGGGAAAGCTTCTCTCTCAGTGTTCTCAGAATCCTCACGTGTCCATGAGTGATCTTATCTTCACTGTTGGTCAAGGTCGTAATTGTAATTTATGGCTTAAAGATCCCACTGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCGTGGAGGCTCATCTGTTGCATTACTTGAAATCACAGGGGGCAAAGGTTCTATTCAAGTTAATGGCAAGACATATCGAAAGAATGCCCGTCTGATTTTAAGTGGAGGTGATGAGGTGGTCTTTGGTTCTTCTGGCAAGCATGCTTATATCTTTCAGCTGCTCACAAATAATAATATTAGTCCTGCTGTTATACCTTCTTCTGTGAGCATTTTAGAAGCCCAGAGTGCTCCAATAAATGGAACGCAAGTTGAAGCTAGATCTGGTGATCCTTCTGCTGTTGCTGGAGCATCGATATTGGCCTCCTTATCTAATCTTCCTAAAGATTTATCTCTCCTTTCACCTCCTGCTAAAACTGGAAAGAATGTGCAACAGAACTCTGACATTTCATCACTACCTTCTGGCAACGAGGATGATATGCCAATCAGTGAAATGAAGGATGCCACCAATGATGTAGCATCTGAAGTTTGCTCTGCTGACAAAACTGTTAATGAAAATCCTAGTCTTGACACAGCAGAAGTCGACATCAATGTGGATGCCGATGTTAGGAAGGTTACTGCTGCTACATATGAATTGAGGCCATTACTGCGCTTGCTTGCTGGTTCATGTCCTGAACTTGATTTAAGTTGTGGCATTACCAAGATATTGGAGGAGCGAAGGGAATTAAGAGAGCTCCTTAAAGATGTTGATACCCCAACAATATTGGCATCAACCAGGCGACAAGCATTTAGGGACAGTTTAGAACAGAGAATTCTCAAATCTAAGAATATTGATGTCTCTTTTGAAACTTTCCCATATTATCTAAGTGATACAACAAAGAGCGTTTTGATTGCTTCTACATTTATTCATTTGAAGTGCATGGGCTTTGGAAAATATGCTTCTGACCTCTCATCAGTGTCTCCACGAATATTGTTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCGAAGCATTTTGGTGCCAGGCTTCTGATTGTCGATTCTCTCTCATTGCCTGGCGGAGCACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCCAGACCTGAAAAACCATCATCTGTGTTTACTAAGAGAAGTTCCCAGACTGCCACATTACAACATAAGAAACCAGCTTCTAGTGTTGATGCTGAAATTGTAGGTGGATCAACGATAAGTTCTCAGGCTATGCTGAAGCAAGAGGTTTCTACCGCATCGTCAAAGGGCACTACTCTTAAAGAGGGTGATCGAGTAAAATTTGTTGGTAACTTTCCTTCTGCCGTCTCATCACTGCCAAATTATCCTTCAAGGGGACCTAGCTATGGCTCCCGAGGCAAAGTTCTGCTTGCTTTTGAAGATAATAGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCTTTGTGAGGATGACCGTGGGTTCTTTTGTTCAGCAAATCATTTACTACGGGTAGATGGTTCTGGAGGGGATGACGCGGACAAAGTTGCAATTAGTGATATCTTTGAGGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATATAGAGAAGGCAATGGTTGGGAACTATGAAGTTTTGAAAAATAAATTTGAAAGCTTGCCACCAAATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGACTCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCACTACTTGATCTTGCTTTTCCGGATAACTTTGGTAGACTGCATGATCGGAGCAAAGAAACCCCTAAAGTAATGAAGCAACTTGGTCGTCTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGACGAGGGTATACTTTCTGATTGGAAGCAACAATTAGAACGTGATATTGAAACTATGAAAGCTCAGTCCAATATTGTCAGCATTCGCACAGTTCTCAACAGGATTGGATTGGATTGCCCTGACCTTGAGACTCTTAGCATCAAAGACCAAACCCTAACAACTGAAAGTGTGGAGAAGATCATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATCTAAAGCTTCTATCAAAGATTCCAAGCTTGTGATATCTGCAGAAAGCCTTAATTATGGAATTAACATTCTACAGGGCATTCAAAATGAGAACAAAAACTTGAAAAAATCACTGAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAACTTCTTGCTGATGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTTATGCTTCCTCTACAGAGGCCTGAATTGTTTTGCAAAGGACAGCTGGCTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTCATTTTAGTGAAAGAAGATTTGGCACCTGACGTTGATTTTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCTTTGTCTGAGAGCAAACCTTTACCTGGATTGTGTGGCAGTGGTGACATTCGTCCCTTAAAGATGGATGATTTTAGATATGCACATGAGCAGGTGTGTGCAAGCGTGTCATCAGAGTCAACAAATATGAATGAGCTACTCCAATGGAATGACCTCTATGGAGAAGGAGGATCAAGAAAAATGAGATCTCTGAGCTATTTCATGTAA 3714 0.4319 MVETRRSSSSSSKRSLSSPSPPNNTKRCKVSEDSSSTTVPSVAPVNESGTANESAEPELMLSDLPETASLKAVDGCVAMSPNKSPSAPVEGETAEKSKGVLMAAATTTGGRSKKQRPSKLSPKVAWGKLLSQCSQNPHVSMSDLIFTVGQGRNCNLWLKDPTVGNVLCKLSHIERGGSSVALLEITGGKGSIQVNGKTYRKNARLILSGGDEVVFGSSGKHAYIFQLLTNNNISPAVIPSSVSILEAQSAPINGTQVEARSGDPSAVAGASILASLSNLPKDLSLLSPPAKTGKNVQQNSDISSLPSGNEDDMPISEMKDATNDVASEVCSADKTVNENPSLDTAEVDINVDADVRKVTAATYELRPLLRLLAGSCPELDLSCGITKILEERRELRELLKDVDTPTILASTRRQAFRDSLEQRILKSKNIDVSFETFPYYLSDTTKSVLIASTFIHLKCMGFGKYASDLSSVSPRILLSGPAGSEIYQETLCKALAKHFGARLLIVDSLSLPGGAPSKEVDSAKESSRPEKPSSVFTKRSSQTATLQHKKPASSVDAEIVGGSTISSQAMLKQEVSTASSKGTTLKEGDRVKFVGNFPSAVSSLPNYPSRGPSYGSRGKVLLAFEDNRSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDGSGGDDADKVAISDIFEVTSNQSKSGPLVLFIKDIEKAMVGNYEVLKNKFESLPPNVVVIGSHTLLDNRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFGRLHDRSKETPKVMKQLGRLFPNKVTIQLPQDEGILSDWKQQLERDIETMKAQSNIVSIRTVLNRIGLDCPDLETLSIKDQTLTTESVEKIIGWAISYHFMHSSKASIKDSKLVISAESLNYGINILQGIQNENKNLKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILRVILVKEDLAPDVDFEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALSESKPLPGLCGSGDIRPLKMDDFRYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0171 1237 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1237 - -
Gso10g0171 1237 Pfam AAA+ lid domain 1126 1162 IPR041569 -
Gso10g0171 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 932 1210 IPR027417 -
Gso10g0171 1237 ProSitePatterns AAA-protein family signature. 1076 1095 IPR003960 GO:0005524|GO:0016887
Gso10g0171 1237 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1237 - -
Gso10g0171 1237 Pfam ATPase family associated with various cellular activities (AAA) 973 1102 IPR003959 GO:0005524|GO:0016887
Gso10g0171 1237 SMART AAA_5 969 1106 IPR003593 -
Gso10g0171 1237 MobiDBLite consensus disorder prediction 1 55 - -
Gso10g0171 1237 SUPERFAMILY SMAD/FHA domain 127 219 IPR008984 GO:0005515
Gso10g0171 1237 CDD AAA 971 1104 - -
Gso10g0171 1237 MobiDBLite consensus disorder prediction 290 310 - -
Gso10g0171 1237 Gene3D - 125 234 - -
Gso10g0171 1237 MobiDBLite consensus disorder prediction 287 313 - -
Gso10g0171 1237 MobiDBLite consensus disorder prediction 515 555 - -
Gso10g0171 1237 MobiDBLite consensus disorder prediction 1 64 - -
Gso10g0171 1237 MobiDBLite consensus disorder prediction 533 550 - -
Gso10g0171 1237 Gene3D - 1105 1199 - -
Gso10g0171 1237 Gene3D - 931 1211 IPR027417 -
Gso10g0171 1237 Coils Coil 893 913 - -
Gso10g0171 1237 CDD FHA 151 227 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0171 Gso-Chr10 1752519 1764475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0171 932 1176 Calmodulin-binding Proteins AT3G56690 38.492 1.70e-39 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0171 - - gmx:106794125 2358.56