Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0166 ATGAAGTTCTGCAAGACCTACCAGCAGTACATGCAAGGACATGGCCACAACAAGCTCCCTTCTGTTGGCTTCAAGAACCTCAAAAAGATCATTAAAAGCTGCAGGAGAGCCTCCACTCAACCTACCTGCCCTGATCATTGCCCAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAATGAAATGTCAGATATAGTAGGGTGCTTTAATCAGCGCGCGCAGCAATTGCTGGAACTGCATCTTGCTTCTGGCTTCAGAAAGTACTTTCTCATGTTGAAAGGAAAATTACACAAGAATCATACTGCTCTAATCGAAGAAGGAAAAGATCTAGTCATATATGCACTCATAAATTCCATCGCAATTCGAAAAATCTTGAAGAAATATGATAAGATTCATTATTCCAAGCAAGGCCAATTATTCAAGTCGAAAGTCCAGACCATGCACAAGGAAATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATTGCCTTACACATTAACTTAAGGGAAACAAAAGCCAAGCCAAGGGAGGCATCCGCACTGTTTGATGGATGTTATCTCACATTTACGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCCGTCAAAATTGATATTGACTTGACCTGCTCTATATGCTTGGATACAGTGTTTGATCCAGTTTCTCTGACATGCGGCCACATATTCTGCTACACCTGTGCTTGCTCAACTGCATCAGTTACCATTGTCGATGGACTTAAGGCAGCAAATCCTAAAGAAAAATGTCCTCTATGCCGAGAGGGAAGAGTTTACGAAGATGCTGTGCATTTGGAAGAATTAAATATTCTGCTAGGCCGAAGCTGCAGGGAGTACTGGGAGCAAAGGCTTCAGATGGAGAGGGTAGAGAGGGTTAAGCAAGTTAAGGAGCACTGGGAAACGCAGTGTAGGGCGTTCATGGGCATCTAA 948 0.4346 MKFCKTYQQYMQGHGHNKLPSVGFKNLKKIIKSCRRASTQPTCPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQQLLELHLASGFRKYFLMLKGKLHKNHTALIEEGKDLVIYALINSIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLCELIALHINLRETKAKPREASALFDGCYLTFTDGKPSLTCELFDSVKIDIDLTCSICLDTVFDPVSLTCGHIFCYTCACSTASVTIVDGLKAANPKEKCPLCREGRVYEDAVHLEELNILLGRSCREYWEQRLQMERVERVKQVKEHWETQCRAFMGI* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0166 315 ProSitePatterns Zinc finger RING-type signature. 226 235 IPR017907 -
Gso10g0166 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 315 IPR033326 -
Gso10g0166 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 313 IPR013083 -
Gso10g0166 315 CDD SPX_BAH1-like 2 138 - -
Gso10g0166 315 SUPERFAMILY RING/U-box 204 263 - -
Gso10g0166 315 Pfam Zinc finger, C3HC4 type (RING finger) 208 261 - -
Gso10g0166 315 ProSiteProfiles Zinc finger RING-type profile. 211 260 IPR001841 -
Gso10g0166 315 ProSiteProfiles SPX domain profile. 1 142 IPR004331 -
Gso10g0166 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 315 - -
Gso10g0166 315 SMART ring_2 211 259 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0166 Gso-Chr10 1714669 1718423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0166 208 260 C3H Transcription Factor Family AT4G28270 41.379 3.39e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0166 K16275 - gmx:100803060 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g0166 10 1714669 1718423 Gso19g1769 19 46503733 46506875 PCT
Gso10g0166 10 1714669 1718423 Gso3g1803 3 43733601 43737616 PCT