Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0130 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGGAGGTGGACAGCAGAGGAGGATGAGACCTTGGCAAAATACATTCAGACCAACGGGGAAGGTTCTTGGAGGTCATTGCCTAAAAATGCAGGATTATTAAGGTGCGGGAAGAGTTGCAGGCTGAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGGAACATTTCTGCTGAAGAGGAAAATACAATCGTTAAGTTGCACGCTTCTTTTGGTAACAGGTGGTCTTTGATAGCAAGTCATTTACCAGGAAGAACGGACAACGAGATAAAAAACTACTGGAATTCTCACCTCAGCAGAAAAATTTACAGTTTCCCAGGTGCAAGTGCAGGGATCATGGATACACCTAAAGTAGCGTCTATTCCTCCCAAGCTCAAAGGTGGTAGAACAAGCCGTTGGGCCATGAATAAGAACAAAACCTACACCCAAAATGTCAATGACGCAATTAACCAGAGACCCAAACAAACGTTTACTCAACCAAATAGTGATTTCACGGTCTTGGACGCTGACGTGGCAGATGTGAATGAGCCAAGAATAGAGGAGCTAGAGGCAGAGGTAAATAAATGTGACAGGAGCGTTGATGAAAGTAACGATGAAGACATCTTGGGACTGTGCCAAATGGAGGGCATTAGTGACATTTTGGAAAGTTGGCTTCCGGAAACAACATGTGTGGTTTGGGACTTGAGTGAAGAGATAGACAACAATGACATGGTAGTGAGGGTGAGTGATGCGTGTCGCGACAAAATGGCATCGAGTGGAGAGGGGTATTCATGCTCTTCTTCCATGGCATTGGATCAACACTGGGATTGGGAGAGTGTCATAGAGTTTAATAACGTTGTCGAGTCCGAAGCTTGTAATAATTGGGAGCAACAAGAAAAACCGCTCACTTGGCCGTGGGAGGACGATGCTTGGGAAAGCCAAAGCAAAAATTTGGGAGAGACAGATACTCAGATGCAAAACGACATGGTTGATTGGTTCCTCTCTTGA 1029 0.45 MGRAPCCEKVGLKKGRWTAEEDETLAKYIQTNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEENTIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFPGASAGIMDTPKVASIPPKLKGGRTSRWAMNKNKTYTQNVNDAINQRPKQTFTQPNSDFTVLDADVADVNEPRIEELEAEVNKCDRSVDESNDEDILGLCQMEGISDILESWLPETTCVVWDLSEEIDNNDMVVRVSDACRDKMASSGEGYSCSSSMALDQHWDWESVIEFNNVVESEACNNWEQQEKPLTWPWEDDAWESQSKNLGETDTQMQNDMVDWFLS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0130 342 Gene3D - 11 67 - -
Gso10g0130 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso10g0130 342 CDD SANT 16 61 IPR001005 -
Gso10g0130 342 PANTHER - 2 322 - -
Gso10g0130 342 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 322 - -
Gso10g0130 342 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso10g0130 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso10g0130 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso10g0130 342 Gene3D - 71 116 - -
Gso10g0130 342 CDD SANT 71 112 IPR001005 -
Gso10g0130 342 SMART sant 13 63 IPR001005 -
Gso10g0130 342 SMART sant 66 114 IPR001005 -
Gso10g0130 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso10g0130 342 Coils Coil 193 213 - -
Gso10g0130 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso10g0130 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0130 Gso-Chr10 1349130 1354016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0130 1 179 MYB Transcription Factor Family AT5G49330 61.111 3.90e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g0130 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0130 K09422 - gmx:100793350 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0121 2 1258719 1263142 Gso10g0130 10 1349130 1354016 GST
Gso19g1808 19 46799340 46803716 Gso10g0130 10 1349130 1354016 PCT
Gso3g1843 3 44042349 44046468 Gso10g0130 10 1349130 1354016 PCT
Gso10g0130 10 1349130 1354016 Gso19g1808 19 46799340 46803716 PCT
Gso10g0130 10 1349130 1354016 Gso3g1843 3 44042349 44046468 PCT