Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0124 ATGATGGAAGCCACTTACCCATCGCCAATGTTTCGCGGTGTTCGTTTCGTTCTCCGTGGCTTCAATCCCGTCGCCCAAAACCAGATCCGGTTCAAGCTTGCCAATGGCGGTGGAGTCGACGTAGGACAGTACGGCGGGAGTTGCACGCATGTCATTGTCGATAACGTTGCTTATGACGATCCTGTGTGTGTTGCTGCCAGAAATGATCGGAAGACGGTTGTCACTGCATTGTGGGTTGAACACAGTGCTGATATTGGAATGCCTGTTGATGCTACTTCGGTTATGTACAGACCTCGTAAAGACTTAGATGGAATACCAGGTGCAAAAGATTTGATAATGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTAATGGGTGCACAGTTTTCTAAGCCTTTGGTGGCAAACAAGGTTACTCATCTCATATGCTACAAATTTGAAGGAGAGAAGTATGAGCTTGCCAAGAAATTGGGCACAATAAAGTTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGGTGCTTCTTCCCGAAGACAATTATAACAAGAGTGGTTTTGAACTAGAGGTGATGGAGGAAGAGGCTAAGGATTCTGAGCAAGAGGCTGAAGATTCTAAGCTGGGACAATCAGGGGGAAGAAAAAGAAAACAAAGCCCCCTTAGTTCGAAAATTGGTATAGCTGCTACTCCTGGATTGTCGAAATCAGCAACAGAGGCATCAAACGCCTTACCAGATTCTACTGGTCCACAGGTCTTGCCAAATGTCAATAATGGTGAAAACTCTTTAACCGTTCCAGGAAATAAGAGCAGACCTGATCAAGGCTCGAGCTTTCATAATGTTGATGACTCAAAGGTAAGCTATCAGGCTGCTGATATTTCTAGACATTCTACATCATGTCAGTTACCTAACAAATATGTAAAGACCAGTGAGTCTAAGAATGCTGATTCTCCAAAGGCACCTGGCTGCCAGGATCTTGGCAATATGGGAAATACAAATTCATCTGATCAGCAGCCTGATCTGAATTGCGACATCTCAGAGTCTAAGAAGGTGGCAAGTGATTTGAGAGAAACTTCTGCAAGTGCTGCTGGAGTTGCACATTCAAATGAAAATCTTAGAACTGCAAGTTATTCTAGGAAGAACCAAAAAGGATTTACTCTTCCAAGGATCTTAGATGAAAGCTCAGGTAGAGAAGGCAACAACTGTGATAACAGTAAGGTTCAAAAGGCCAGTGAGGGTGTCAAATCTACCAGTGTTGAAGTTTCTGGGAAAGGAAATGATTTTGTTAAAGAAGATGAGCCAATTAGTTTATTGCCTCAAAAGAGGATAAACAAAGCTTCTTTTACTAAATTAAAATCAAGAAAGAAGACTTCAGTCCCATCAGCAAATGGTAAATCTCAAGGATTAAAAGTGACATCTCAGGTAGATGAGCCACCTGAAGCTGATGACTACTTTTCTATAGGTAAAGATGGTATAAATAACTCAAACACTTGCTTAGTTTCGAAACCTTCAGGTTCTACCTCCAACTCACTGGCATTTGATGAGCTTCTTTCAAGAAATGCCAGCCCAGAATCTGTTCAGTGTGATAATGTCTGTCAGAATTCATCAAAAACGGCTGTTCAGAGCTTAAGTGAGTCTAAAATTAATGGCAAACCTGATATCACAGGTTCTGGAATGCAACAAGTTGGTGGTAATGAAGCAGAGCAACATACTGTCACTAAAAATCTTGATTGTTCATCTCTGGGAAACAAAAAATCATGTAATGTGGAATCTGCTGGTTGTACTAAATTGGATTTAGGCACTGAAGAAAGTAATAAACTGGTTAGCAAATCACCCCGAAAGAAGTCGGTTGCCAAGAGAAGTTTGGGTTCTAAACCTAAAGTAGGTGCCACTGCTAAACAGAAAAAATCACTTTCCCTGACTAAAACTACCCTGCAAGGTGAAGGTGAAACTTTTTCCAGTGGAAGCAAAGAGGTTGCAACTGGTGATGCGAGGATGCATCAGGGATGCCCCCAAATCTTTGATGTTAATAAAACAACAGAGCAAGAAACAGTTAGTAAAAATGCTGGTGACAGAACTGAGTTTTTGGACGATGAAACTGAGGCTCCAGATGACAAATGTGAATATGAGTTAGGAATGGCCCTTGACGAAGACTTGGTTCATCTTTCAAAAAAGCCAGATACAGCAAAAGAAGAGAAGTCAGAAGCAACTTACCCTGCAACAAAATGTGAAGAGGCAATGCCTCCTAAGAATGGCACAAATAAAACTGAAAAACAGAAAACATCTTCACTGGCAGTAAAGCATCAAGCTAGAAAACTTCCTGCTGGTAAAGTCAAGGCCACAGTTAGTAAATATGCAGAAGATGATGGTGACAGAACTGAGCTTGTGGGGGATGAAACCGAGGCTCCAGATGGCAAATGTGAACCCGAGTTACGAATGGCACTCGATGAAGAATCTCATCTTTCAAAAAAATCAGATACAGCAACAGAAGAGAAGTCGGAAGTAATTTGCCCTGAAACAAAATGTGAAGAGCCAATGCCTCCTAAGAAAGGCACAAAAAAAACTGAAAAACAGAAGCCATCTTCACTGGTAGTAAAGAATCAAGCAAGAAAACGTCCTGCTGGTAAAACCAAGGCCAAAGTTGCCAAGGAATTACCAAAATCTATGGCAGTATCTGGGGAGAAGATTCGTAATGAGACCGAGCATGAGCCAGAGATAGAAACCATGGAAGAAATGCCCCTTCCTGATGATAAAAGTGACCAGCCAGCCATTCAAAGAAATAAGTCAGAGAATTTTGCTGAAGAGAAGGAGAATAGGCCAATTGATGGAGAGCAGGGCAGAAGCAATGGCAGTTCAACTATTAAATCTAGTGTAAGGACAGCAAAGATCAAGTCTAAGAAATCGGGGCTCAATCCATCTATAACAGAATCTAACACGAGAGTGAAAACTGAAGCCGCATGTTTTATATTAAGTGGGCATCGTCTACAGAGAAAAGAGTTTCAACAAGTAATCAAGCGATTAAAAGGAAGGGTTTGCCGGGATTCTCACCAGTGGTCATATCAGGCGACACACTTCATAGCTCCAGACCCCATACGCAGGACTGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTAAAAACTGATTTCCTAACTGCCAGTAGCCAGGCAGGAAAATTGTTGGCAGAGGAGCCTTATGAGTGGCACCAGAATGGTCTCAGTGAGGATGGCACAATTAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTAAAAGAAAGAACAGGTCATGGAGCCTTCTATGGAATGCGTATTGTTGTATACGGCGATTGCATTGCCCCACCTTTGGATACTCTGAAACGTGTCATTAAAGCTGGAGATGGAACAATATTAGCAACTTCTCCTCCTTATACTCGCTTCCTTAGTACAGGAATCGACTATGCTGTAGTTAGCCCTGGCATGCCACGTGTTGACATGTGGGTGCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTACTTGGTTGAGTATGTTTGCAAGCCCGGGTTCTCCCTTGAGAGACATGTATTATATGGCACTCATGCTTGGGCAGAGAGATCATTTGATAAACTTAAAAGCAAGGCAGAAGAGATTGTTGAAGAACTCGTTGCTCCTGAGGATTCTGGTGATGATCATGATCATGATATAATTTGCAAAGTATGTGGATCCCGCGATAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCCGTCGGATGTGGAATCGGTACTCATATCGATTGCTGCGATCCTCCTCTAACACATGTACCTGAGGAAGATTGGTTTTGCCCAAAATGCAGTAGCAACCGAAACTGCTCAAACAATCCCAGTAAAAGGAAAAAGACTGTTTTATCTTCATCAGTGTATGTGAGGTGA 3960 0.4235 MMEATYPSPMFRGVRFVLRGFNPVAQNQIRFKLANGGGVDVGQYGGSCTHVIVDNVAYDDPVCVAARNDRKTVVTALWVEHSADIGMPVDATSVMYRPRKDLDGIPGAKDLIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKKLGTIKLVNHRWLEDCLKEWVLLPEDNYNKSGFELEVMEEEAKDSEQEAEDSKLGQSGGRKRKQSPLSSKIGIAATPGLSKSATEASNALPDSTGPQVLPNVNNGENSLTVPGNKSRPDQGSSFHNVDDSKVSYQAADISRHSTSCQLPNKYVKTSESKNADSPKAPGCQDLGNMGNTNSSDQQPDLNCDISESKKVASDLRETSASAAGVAHSNENLRTASYSRKNQKGFTLPRILDESSGREGNNCDNSKVQKASEGVKSTSVEVSGKGNDFVKEDEPISLLPQKRINKASFTKLKSRKKTSVPSANGKSQGLKVTSQVDEPPEADDYFSIGKDGINNSNTCLVSKPSGSTSNSLAFDELLSRNASPESVQCDNVCQNSSKTAVQSLSESKINGKPDITGSGMQQVGGNEAEQHTVTKNLDCSSLGNKKSCNVESAGCTKLDLGTEESNKLVSKSPRKKSVAKRSLGSKPKVGATAKQKKSLSLTKTTLQGEGETFSSGSKEVATGDARMHQGCPQIFDVNKTTEQETVSKNAGDRTEFLDDETEAPDDKCEYELGMALDEDLVHLSKKPDTAKEEKSEATYPATKCEEAMPPKNGTNKTEKQKTSSLAVKHQARKLPAGKVKATVSKYAEDDGDRTELVGDETEAPDGKCEPELRMALDEESHLSKKSDTATEEKSEVICPETKCEEPMPPKKGTKKTEKQKPSSLVVKNQARKRPAGKTKAKVAKELPKSMAVSGEKIRNETEHEPEIETMEEMPLPDDKSDQPAIQRNKSENFAEEKENRPIDGEQGRSNGSSTIKSSVRTAKIKSKKSGLNPSITESNTRVKTEAACFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDFLTASSQAGKLLAEEPYEWHQNGLSEDGTINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTILATSPPYTRFLSTGIDYAVVSPGMPRVDMWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHAWAERSFDKLKSKAEEIVEELVAPEDSGDDHDHDIICKVCGSRDRGDVMLICGDESGSVGCGIGTHIDCCDPPLTHVPEEDWFCPKCSSNRNCSNNPSKRKKTVLSSSVYVR* 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0124 1319 MobiDBLite consensus disorder prediction 406 432 - -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 299 326 - -
Gso10g0124 1319 Pfam PHD-finger 1243 1296 IPR019787 -
Gso10g0124 1319 SUPERFAMILY BRCT domain 100 192 IPR036420 -
Gso10g0124 1319 SMART BRCT_7 99 183 IPR001357 -
Gso10g0124 1319 SMART BRCT_7 1107 1194 IPR001357 -
Gso10g0124 1319 SMART BRCT_7 988 1069 IPR001357 -
Gso10g0124 1319 SMART BRCT_7 8 86 IPR001357 -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 382 497 - -
Gso10g0124 1319 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1294 IPR044254 -
Gso10g0124 1319 Gene3D BRCT domain 100 224 IPR036420 -
Gso10g0124 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1229 1317 IPR013083 -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 201 351 - -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 335 351 - -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 552 577 - -
Gso10g0124 1319 ProSiteProfiles Zinc finger PHD-type profile. 1241 1297 IPR019787 -
Gso10g0124 1319 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Gso10g0124 1319 ProSiteProfiles BRCT domain profile. 6 96 IPR001357 -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 643 667 - -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 953 984 - -
Gso10g0124 1319 CDD BRCT_TopBP1_rpt7 996 1069 - -
Gso10g0124 1319 Coils Coil 198 218 - -
Gso10g0124 1319 Gene3D BRCT domain 989 1105 IPR036420 -
Gso10g0124 1319 SUPERFAMILY BRCT domain 997 1082 IPR036420 -
Gso10g0124 1319 Pfam BRCA1 C Terminus (BRCT) domain 1000 1064 IPR001357 -
Gso10g0124 1319 ProSiteProfiles BRCT domain profile. 997 1079 IPR001357 -
Gso10g0124 1319 Pfam twin BRCT domain 111 175 IPR001357 -
Gso10g0124 1319 SUPERFAMILY FYVE/PHD zinc finger 1232 1300 IPR011011 -
Gso10g0124 1319 SUPERFAMILY BRCT domain 7 93 IPR036420 -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 731 748 - -
Gso10g0124 1319 Gene3D BRCT domain 1106 1207 IPR036420 -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 731 984 - -
Gso10g0124 1319 SMART PHD_3 1243 1295 IPR001965 -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 791 869 - -
Gso10g0124 1319 Gene3D BRCT domain 1 95 IPR036420 -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 609 713 - -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 903 952 - -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 243 293 - -
Gso10g0124 1319 MobiDBLite consensus disorder prediction 462 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0124 Gso-Chr10 1311919 1318596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0124 129 244 Core DNA Replication Machinery Family AT4G02110 62.069 7.67e-38 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso10g0124 BRCT 6.4e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0124 K10728 - gmx:100783461 2569.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0118 2 1222978 1229626 Gso10g0124 10 1311919 1318596 GST