Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0119 ATGGAGCTCTCTGTGGTTGCAAGAAACATGGAAGAAGTTGTGTTGCTGGTTGATGATTTGAGATCACTTTCTGGGATTTCTCGCTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTCCAAAACCTTGGAAGCTCCTTGTGCTTGTTCTGGGACAGTTAAGTTTGCTCACAGAGATTGCATTCAGACTTGGTGCAATGAGAAAGGAAATACAACTTGTGAAATATGTCTCCAGCAATATGAATCCGGATATACAGCAGCCCCAAAGAAATCGCAAGTAGCTGATGCAGCAATGACCATTAGGGATAGCATGCAAATTTCAAGGACTGAACAAGAACCGTTAAATACAAGAATAGTGGGTATAGTTGAAGGAAACAATTACTCTGAATGCACGTATGCTTCGGATAGAACCGCAGCTTGTTGTCGATCCCTGGCTTTAGCATTTACACTCATCTTGCTTGTAAGACATCTTTTCGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACGGTCTTTTTCCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGGCGATCGGAGCCATTCATGACAATATTAAGCGTCACCATCATCAGGATTCTGACGATGACTCATCGATATCTGATGGAGATGATGAAGAAAATGAGACACCAAATGATGAAATTTTAAGACATTCACAATCATAG 711 0.3994 MELSVVARNMEEVVLLVDDLRSLSGISRCRICHEEEFESSKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYESGYTAAPKKSQVADAAMTIRDSMQISRTEQEPLNTRIVGIVEGNNYSECTYASDRTAACCRSLALAFTLILLVRHLFALLTDGMEDYPFTILTVFFLRASGIIIPMYIIIKAIGAIHDNIKRHHHQDSDDDSSISDGDDEENETPNDEILRHSQS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0119 236 SUPERFAMILY RING/U-box 28 81 - -
Gso10g0119 236 MobiDBLite consensus disorder prediction 205 236 - -
Gso10g0119 236 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Gso10g0119 236 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Gso10g0119 236 SMART ringv_2 28 77 IPR011016 GO:0008270
Gso10g0119 236 Pfam Protein of unknown function (DUF3675) 83 194 IPR022143 -
Gso10g0119 236 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 233 IPR033275 -
Gso10g0119 236 CDD RING_CH-C4HC3_MARCH 29 76 - -
Gso10g0119 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 88 IPR013083 -
Gso10g0119 236 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Gso10g0119 236 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 6 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0119 Gso-Chr10 1257554 1260908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0119 29 76 C3H Transcription Factor Family AT2G37950 44.898 2.43e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0119 - - gmx:100776501 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0113 2 1168410 1171671 Gso10g0119 10 1257554 1260908 GST
Gso19g1816 19 46900921 46903166 Gso10g0119 10 1257554 1260908 PCT
Gso3g1851 3 44122949 44125246 Gso10g0119 10 1257554 1260908 PCT
Gso10g0119 10 1257554 1260908 Gso19g1816 19 46900921 46903166 PCT
Gso10g0119 10 1257554 1260908 Gso3g1851 3 44122949 44125246 PCT