Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0094 ATGGATACGATCAGTGTTCAGGCGATGAGAAGCTTATCAGATAGTGACTCATTATCATCTGCAACATATGCAAGTGAAGAAGATATGAAAATTAAGAAAGGTCCATGGACTGAGGAAGAAGATTCTGTTCTGATCAACTACGTCAACTTCCAAGGCGAAGGTCAATGGAACTCCCTCGCTCGCTCTGCAGGTCTAAAGCGAACGGGCAAAAGCTGCAGACTGAGATGGTTGAACTATTTGCGACCAAATGTTCGACGTGGGAACATCACCCTTCAAGAACAGCTCTTGATTCTCGAACTCCATTCCCGCTGGGGCAATCGGTGGGCTAAAATAGCAGAAGAATTGGGTGGGAGAACAGACAATGAGATAAAGAACTATTGGAGGACTCGAGTGGTGAAGCAGGCCAAGCAACTCAAATGTGATGTAAACAGCAAACAGTTCAGGGACACGGTGCGTTTCGTTTGGATGCCGCGCCTTATGGAGCAGATTCAGGCTTCTTTCAGGATTGTTCCTTCAGATTCTTCCCATGGCCTTGATCAAACCACATTGTGCAACACTCAACAAACAGAATCTAGTACTGATGCCAATCCCACCATGTTTTGTGACAACTCAATGGTTTCATCGTACTCATCAGAGGTTGATCTTCAGCCTCTTTCTCTTTCTGATACAAGTACAACTTCATCATCGGAAAGTGCAGAGAAGAAGGAGTCCATATCCTCCTCCCTTTGGCAGCAATGGGACTACTCTGACCTCCAAGCATTTGAACCATGCAATGGTTTTGGTGATGCAGACTTGTGGACCGATGAAAACATATGGTTCTTGCAGCAGCATCTTGCTGATCACTTATGA 849 0.4535 MDTISVQAMRSLSDSDSLSSATYASEEDMKIKKGPWTEEEDSVLINYVNFQGEGQWNSLARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNRWAKIAEELGGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTVRFVWMPRLMEQIQASFRIVPSDSSHGLDQTTLCNTQQTESSTDANPTMFCDNSMVSSYSSEVDLQPLSLSDTSTTSSSESAEKKESISSSLWQQWDYSDLQAFEPCNGFGDADLWTDENIWFLQQHLADHL* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0094 282 Gene3D - 32 85 - -
Gso10g0094 282 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Gso10g0094 282 Gene3D - 90 131 - -
Gso10g0094 282 SMART sant 32 82 IPR001005 -
Gso10g0094 282 SMART sant 85 133 IPR001005 -
Gso10g0094 282 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 19 275 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso10g0094 282 CDD SANT 35 80 IPR001005 -
Gso10g0094 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 80 IPR017930 -
Gso10g0094 282 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 19 275 - -
Gso10g0094 282 CDD SANT 106 129 IPR001005 -
Gso10g0094 282 ProSiteProfiles Myb-like domain profile. 28 80 IPR001005 -
Gso10g0094 282 SUPERFAMILY Homeodomain-like 30 127 IPR009057 -
Gso10g0094 282 Pfam Myb-like DNA-binding domain 86 129 IPR001005 -
Gso10g0094 282 Pfam Myb-like DNA-binding domain 33 80 IPR001005 -
Gso10g0094 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0094 Gso-Chr10 996067 997725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0094 12 279 MYB Transcription Factor Family AT2G47190 46.715 1.05e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g0094 Myb_DNA-binding 9.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0094 K09422 - gmx:100777932 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0087 2 948047 949578 Gso10g0094 10 996067 997725 GST
Gso19g1842 19 47125827 47127748 Gso10g0094 10 996067 997725 PCT
Gso3g1878 3 44338241 44339634 Gso10g0094 10 996067 997725 PCT
Gso10g0094 10 996067 997725 Gso19g1842 19 47125827 47127748 PCT
Gso10g0094 10 996067 997725 Gso3g1878 3 44338241 44339634 PCT