Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0093 ATGGATGTTAAGAAAGGTGGGTCTGTAGTACAAGCACAAGTGAAGTTGCAGAAGCATAACGAAAAGGAGATGGGCATGAGAAAAGGTCCATGGGCGGTTGAGGAGGACACCATTCTGGTCAATTACATCGCCACACACGGTGAAGGCCACTGGAATTCCGTGGCACGATGTGCAGGTCTAAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTAAACTACTTGCGCCCAGACGTGCGGCGTGGAAATATCACACTCCAAGAACAAATATTAATTCTCGACCTTCACTCTCGCTGGGGCAACAGGTGGTCAAAGATTGCTCAACAGCTACCAGGAAGAACAGACAACGAAATAAAGAACTATTGGAGGACCAGAGTGATAAAACAAGCGAAGCAGCTAAAGTGCGATGTGAATAGCAAACAGTTCAGAGACACGTTGCGTTACGTTTGGATGCCGCGCTTGCTGGAGCGGCTTCAGCCCACATCACAAGCACTGGAGCCAAACCAAAGTGGACTTGTGTTACACGCTTCATCATCACTGCTTCCTTCGAATTCCGACCGTAGTATTGAAAGGGGGTCGGATCTGTGGCCAGGTTTCAATAACCAAATGTTGTTGGAACAGGGGAGTGGCGGTGACTTGTTGGAAAGTTTGTGGGATGACGACAATATGTGCTTTTTGCAACAGCTTTCTTATGACCTCCAAATGAAATAA 711 0.4768 MDVKKGGSVVQAQVKLQKHNEKEMGMRKGPWAVEEDTILVNYIATHGEGHWNSVARCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQQLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDTLRYVWMPRLLERLQPTSQALEPNQSGLVLHASSSLLPSNSDRSIERGSDLWPGFNNQMLLEQGSGGDLLESLWDDDNMCFLQQLSYDLQMK* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0093 236 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Gso10g0093 236 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 232 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso10g0093 236 Gene3D - 85 126 - -
Gso10g0093 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 75 IPR017930 -
Gso10g0093 236 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Gso10g0093 236 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Gso10g0093 236 PANTHER MYB TRANSCRIPTION FACTOR 1 232 - -
Gso10g0093 236 SMART sant 80 128 IPR001005 -
Gso10g0093 236 SMART sant 27 77 IPR001005 -
Gso10g0093 236 SUPERFAMILY Homeodomain-like 24 122 IPR009057 -
Gso10g0093 236 CDD SANT 85 124 IPR001005 -
Gso10g0093 236 Gene3D - 28 80 - -
Gso10g0093 236 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Gso10g0093 236 CDD SANT 30 75 IPR001005 -
Gso10g0093 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0093 Gso-Chr10 988167 989355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0093 26 161 MYB Transcription Factor Family AT1G48000 75.735 5.61e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g0093 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0093 K09422 - gmx:778065 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1843 19 47134634 47136375 Gso10g0093 10 988167 989355 PCT
Gso3g1879 3 44345928 44347285 Gso10g0093 10 988167 989355 PCT
Gso10g0093 10 988167 989355 Gso19g1843 19 47134634 47136375 PCT
Gso10g0093 10 988167 989355 Gso3g1879 3 44345928 44347285 PCT