Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0088 ATGGCATCGGCGGGTGTAGCACCTGCTTCTGGAGTAAGAGATGTGAATGCAAATTCGGTTGCTGTTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGCTATATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGATACAAGAACCGGGAACTGCAAACCATGCGTCTTCTGGACCATCCCAATGTTGTAACTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGACGAGCTTTATCTTAATTTGGTACTTGAGTATGTTCCTGAGACTGTCCACCGAGTTATCAGACATTACAACAAAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAGATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGGTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCACCTGAACTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATTTGGTCAGCTGGTTGTGTACTTGGTGAACTAATGCTTGGCCAGCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAGATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACCCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGAGCTTAAAGGAGTGCCTCCAGGCATGCTGGTGAAACTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGCGTCATAG 1230 0.4301 MASAGVAPASGVRDVNANSVAVERLPDEMNGMKIRDEREMEATVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGNGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYNKMNQRMPLIYVKLYFYQICRALAYIHNCIGVSHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELMLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTESKFPQIKAHPWHKIFHKRLPPEAVDLVSRLLQYSPNLRCTALEALVHPFFDELRDPNTRLPNGRYLPPLFNFRANELKGVPPGMLVKLIPSHARKQCALFAS* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0088 409 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0088 409 SUPERFAMILY Protein kinase-like (PK-like) 72 382 IPR011009 -
Gso10g0088 409 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 407 - -
Gso10g0088 409 CDD STKc_GSK3 68 360 IPR039192 -
Gso10g0088 409 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Gso10g0088 409 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0088 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Gso10g0088 409 Gene3D Transferase(Phosphotransferase) domain 1 153 401 - -
Gso10g0088 409 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Gso10g0088 409 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0088 409 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0088 Gso-Chr10 938050 942334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0088 79 365 Core Cell Cycle Gene Families AT1G76540 34.915 2.52e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gso10g0088 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0088 K00924 - gmx:100817819 837.41