Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0079 ATGGTGAATGGAAAAATACTTGCATCTGGTGTTTCCCTAATCCTTGTGGTGGGTGTTGCCATCGGTGTTGTGGTTGTTGTTAACAGAAAGGGCACATCCAATCCTGAAGTAGAAGCTCAACAGAAATCCGTGAAGGCAATGTGTGAAGGCACCGATGACCCTAAGCTTTGTCACGATACTCTTATTACCGTGAACAGCACGAATTCCTCAGATCCAAAGGCATACATAGCTGCTGGAGTGGAAGCAACGGTGAAAAGCGTGATCCAAGCATTGAACATGAGTGATAGGCTCAAAGTGGAACATGGAGACAAAGATCCTGGCATCAAAATGGCCCTTGATGATTGCAAGGACTTAATCGAATTCGCCTTGGACAGCATCGAGTCCTCGGCTAATTTGGTTAACAATCACAACATTCAAGCGCTGCATGACCAATCTCCTGACTTCAGGAACTGGTTGAGTGCAATTATCTCGTACCAGCAATCATGCATGGACGGCTTCAACAACGAGACCAACGGTGAGCAGGAAATTAAGGAACAACTGCACACAGGAAGTTTGGACCAAATGGGGAAGCTCACTGGCATAGTCCTAGACATTGTCACTAACTTATCCAAAATCCTTCAGAGTTTTGACCTCAAGTTGGATTTGAACCCGGCTTCTCGTCGTCTTCTCGAGCTTGATGCTGAAGGGTACCCTACGTGGTTCTCTGCTGCAGATCGCAGGCTACTTGCTAAGATGAACCAAGGAGGTGCACCCCCACCCAATGCAGTGGTTGCCCTAGATGGTAGTGGTCAATTTAAATCCGTTAAGCAAGCTATTGACTCCTACCCTAAGAATTTCAAAGGCAGATTCATTATTTATGTTAAAGCTGGGATTTATAACGAGTATATCACTATCCCTAAGAAGTCAGAGAATATTTTGATTTATGGTGATGGCCCTACAAAATCCATTATTACTGGTAACAAAAACTTTATAGATGGCGTCAAGACAATGCAAACTGCCACCTTTGCCAATACTGCACCTGGATTCATTGCCAAGTCAATAGCATTCGAGAACACAGCGGGTGCAAAGAAGCACCAAGCAGTGGCATTCAGAAACCAAGGAGACATGTCGGCCATGTTCGACTGTGCCATGCACGGTTACCAAGACACATTGTACACCCAGGCCAACCGTCAATTCTACCGCAACTGCGAAATCTCGGGCACCATAGACTTCATCTTCGGAGCAGCTCCAACTCTGATCCAGAACTCGAGAATCATAGTAAGGAAGCCAGAAGCTAACCAATTCAACACGGTGACCGCAGATGGAACCAAGCAGAAGAACATGGCCACAGGAATCGTGCTCCAGAACTGCGAGATACTGCCGGAGCAAGCTCTGTTCCCTACAAGGTTCCAAACGAAATCCTACTTGGGGAGGCCGTGGAAGGACTTCGCAAGAACAGTAGTTATGGAATCCAACATTGGCGACTTTATTCAGCCAGAGGGGTGGACCCCTTGGAGTGGGAACTTGTTTCTTGACACGTTGTACTATGCTGAGTATGCTAACGTTGGACCTGGTTCCAACGTTCAAGGAAGGGTTAAGTGGAAGGGTTACCATCCCAATATTAATAAGAACGAAGCTGAGCAATTCACTGCTGGCCAATTCCTCAGAGGTGGACCTTCTGGAAATGCCGATGATTGGTTGAAGGCTACTGGCGTTCCTTATACCATTGGTTTCACCAAACCTTGA 1725 0.4649 MVNGKILASGVSLILVVGVAIGVVVVVNRKGTSNPEVEAQQKSVKAMCEGTDDPKLCHDTLITVNSTNSSDPKAYIAAGVEATVKSVIQALNMSDRLKVEHGDKDPGIKMALDDCKDLIEFALDSIESSANLVNNHNIQALHDQSPDFRNWLSAIISYQQSCMDGFNNETNGEQEIKEQLHTGSLDQMGKLTGIVLDIVTNLSKILQSFDLKLDLNPASRRLLELDAEGYPTWFSAADRRLLAKMNQGGAPPPNAVVALDGSGQFKSVKQAIDSYPKNFKGRFIIYVKAGIYNEYITIPKKSENILIYGDGPTKSIITGNKNFIDGVKTMQTATFANTAPGFIAKSIAFENTAGAKKHQAVAFRNQGDMSAMFDCAMHGYQDTLYTQANRQFYRNCEISGTIDFIFGAAPTLIQNSRIIVRKPEANQFNTVTADGTKQKNMATGIVLQNCEILPEQALFPTRFQTKSYLGRPWKDFARTVVMESNIGDFIQPEGWTPWSGNLFLDTLYYAEYANVGPGSNVQGRVKWKGYHPNINKNEAEQFTAGQFLRGGPSGNADDWLKATGVPYTIGFTKP* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0079 574 CDD PMEI-like_3 46 204 - -
Gso10g0079 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 204 IPR035513 -
Gso10g0079 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 203 IPR035513 -
Gso10g0079 574 Gene3D - 251 571 IPR012334 -
Gso10g0079 574 PANTHER PECTINESTERASE 4 571 - -
Gso10g0079 574 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Gso10g0079 574 SUPERFAMILY Pectin lyase-like 250 570 IPR011050 -
Gso10g0079 574 Pfam Pectinesterase 254 550 IPR000070 GO:0030599|GO:0042545
Gso10g0079 574 PANTHER PECTINESTERASE 4 571 - -
Gso10g0079 574 Pfam Plant invertase/pectin methylesterase inhibitor 43 198 IPR006501 GO:0004857
Gso10g0079 574 SMART PMEI_2 39 198 IPR006501 GO:0004857
Gso10g0079 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 202 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0079 Gso-Chr10 886395 888653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0079 6 571 Carbohydrate Esterase AT3G05610 41.228 2.73e-144 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0079 K01051 - gmx:100775246 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0074 2 843666 850339 Gso10g0079 10 886395 888653 GST
Gso19g1858 19 47272926 47275109 Gso10g0079 10 886395 888653 PCT