Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0065 ATGGATTCCTTAGAAGACAGCGGCTATTGGGATTTTCTCGATTACTCTTTCATTGATCAAGCGCCCCCTGATTTCCTTTGGTCCAATAATACTATTAGTGTGAGCACCGAAGTTGACATTCCAGGTGATGCTGCTGCGTGTCAAGAGAACACCAAGAAGAGGGGACATGCTGATTCAAGCTGCAAGGTGGGATCTAAAGCTTGCCGTGAGAAGTTGCGGAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGCTCTGTTTTGGAGCCAGGGAGACCTGTGAGAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGTCAACTTAAAACTGAAGCTCAGGAGCTCAAAAAAACAAATGAAAAATTACTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAATGAACTTCGGGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAAAGGATTGAGAAGCAGTTGAAGGCCTTACCCGTTGCACCAGCAGGGTATATGACTCCACCTGTAGCTGCTGCTGCATATCAAGCAGGGGTTAACAAGATGGCTCTTTATCCAAACTATGGCTACATCCCAATGTGGCAATATCTTCCTCAATCTGTCAGAGACACATCTCATGATCATGAGCTCAGGCCTCCTGCTGCATAG 657 0.4429 MDSLEDSGYWDFLDYSFIDQAPPDFLWSNNTISVSTEVDIPGDAAACQENTKKRGHADSSCKVGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKKTNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKALPVAPAGYMTPPVAAAAYQAGVNKMALYPNYGYIPMWQYLPQSVRDTSHDHELRPPAA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0065 218 PANTHER TRANSCRIPTION FACTOR BHLH104 1 218 - -
Gso10g0065 218 CDD bHLH_AtILR3_like 66 141 - -
Gso10g0065 218 SMART finulus 67 118 IPR011598 GO:0046983
Gso10g0065 218 PANTHER BHLH TRANSCRIPTION FACTOR 1 218 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gso10g0065 218 Pfam Helix-loop-helix DNA-binding domain 64 112 IPR011598 GO:0046983
Gso10g0065 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Gso10g0065 218 Gene3D - 65 145 IPR036638 GO:0046983
Gso10g0065 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 139 IPR036638 GO:0046983
Gso10g0065 218 Coils Coil 102 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0065 Gso-Chr10 736462 741542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0065 51 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 66.864 3.08e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g0065 HLH 2.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0065 - - gmx:100789655 424.091