Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0064 ATGGATTTTGTTAGCCAAAGGCACCTACTTCAATTGTCACATGCAACACCTCCTTCTTCTTCAAATAATTATTCCTTCTTAGTAATCCTTGTCATAGGAATAATGTTTACATCTTTCTTCCTTATAGGCTACTACATGTTAGTTGTCAAGTGCTGCCTCAATTGGCCCCATGTTGATCATGTAAGGATTTTTTCTCTATCTAGGCTTCATGAAGATCCATCTGCACCATACTCAACAGCATCTGAGCCTAGAGGGCTAGAGGAAGCAGTGATCAAATTAATCCCAGTGATTCAATACAAGCCAGAGGAAGGGAACACAGAATTTGGTGAAAGAAGCTTAATTAGTAGTGAGTGTTCAGTTTGCTTGAGTGAGTTTGAACAAGATGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAAAACAATGCTCATTGCCCTCTTTGTAGAAGAACAGTTTCCTTGACAAGCCAAGTCCATCGTCATGTTGACCAAGTCAACCTTCTTATCACTCCAAGGCCTTCCCATCAGGGCCAAAGCCAAAACAATGAAAACCTCACTGATGAAGGAGGTTTTGTTGTGATTGATTTGGATGGTGAACATGATAGAGACCAAGGAAGACAAGAAGAGTTACCAACAACATGTCCTATCATTAGTCTTTCTTCAGGAATTAAGTTATTGGAGGAGAAGAAAGCAAGGAAGCTTCAAAAAGTGACTAGTTTGGGAGATGAGTGTATTGGTGTTAGAGCCAAGGGTGAAAGGTTATCAGTTCAAGCCATGAAGAGGTCTTTCTCCATGGACTCATCAGTGGATAGAAAGTTTTATGGGGCAGTTCAAGAGGCTTTACATCAACAACAGCAAAATGGGAATGTGTTTGAGGTCAGCACAATTGAAGCTTCTGGTGAAAGTGATAGAGTCAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAAATCAAGAAGTGCTGTACTCCCTGTTTATTTGGACCCCTGA 1023 0.4057 MDFVSQRHLLQLSHATPPSSSNNYSFLVILVIGIMFTSFFLIGYYMLVVKCCLNWPHVDHVRIFSLSRLHEDPSAPYSTASEPRGLEEAVIKLIPVIQYKPEEGNTEFGERSLISSECSVCLSEFEQDEKLRVIPNCSHVFHIDCIDVWLQNNAHCPLCRRTVSLTSQVHRHVDQVNLLITPRPSHQGQSQNNENLTDEGGFVVIDLDGEHDRDQGRQEELPTTCPIISLSSGIKLLEEKKARKLQKVTSLGDECIGVRAKGERLSVQAMKRSFSMDSSVDRKFYGAVQEALHQQQQNGNVFEVSTIEASGESDRVKRSFFSFGHGSKSRSAVLPVYLDP* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0064 340 PANTHER RING-H2 FINGER PROTEIN ATL16 11 339 IPR044600 GO:0016567|GO:0016740
Gso10g0064 340 PANTHER RING-H2 FINGER PROTEIN ATL16 11 339 - -
Gso10g0064 340 SUPERFAMILY RING/U-box 102 166 - -
Gso10g0064 340 SMART ring_2 118 159 IPR001841 -
Gso10g0064 340 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Gso10g0064 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 165 IPR013083 -
Gso10g0064 340 CDD RING-H2_PA-TM-RING 117 160 - -
Gso10g0064 340 Pfam Ring finger domain 117 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0064 Gso-Chr10 729335 731047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0064 19 340 C3H Transcription Factor Family AT1G04360 41.595 9.55e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0064 - - gmx:100814827 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1363 3 39567974 39569638 Gso10g0064 10 729335 731047 PCT