Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0062 ATGGATAGTTCCTCTCATCAGCTCCTCCCCTTCAACGAAAACGACCCAGAAGACATGCTTCTCTATGGCATCATCACTTCATACCAAGAAAAAAAAGTGACCATCAACCAAGAGCAAGTGCATAAGAAGAGGAGCAGCTTCCGCGGCGTGCGGAGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGAGACTCCACGCGGCATGGCGTGAGGGTGTGGCTTGGGACATTCGACAACGCCGAGGCCGCCGCGCTGGCGTATGACCAAGCCGCATTCTCCATGAGGGGCTCCGGCGCGGTGCTCAACTTCCCCGTGGAGAAGGTGAAGGAGTCTCTTAGAGACATGAAGCTTGATGGATGCTCTCCCGTTGTGGCCTTGAAGAGGAGACACTCCTTGGCTGCTAAGAGGAAGAAGGAAGATGTCCTTGTTTTCCATGACCTTGGGGCTGATTATTTGGAACACTTGTTGATGTGCTCTGATCTACCTAGTACAACCATTGTTTAA 504 0.5337 MDSSSHQLLPFNENDPEDMLLYGIITSYQEKKVTINQEQVHKKRSSFRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDNAEAAALAYDQAAFSMRGSGAVLNFPVEKVKESLRDMKLDGCSPVVALKRRHSLAAKRKKEDVLVFHDLGADYLEHLLMCSDLPSTTIV* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0062 167 Pfam AP2 domain 46 96 IPR001471 GO:0003700|GO:0006355
Gso10g0062 167 CDD AP2 45 105 IPR001471 GO:0003700|GO:0006355
Gso10g0062 167 ProSiteProfiles AP2/ERF domain profile. 46 104 IPR001471 GO:0003700|GO:0006355
Gso10g0062 167 PANTHER DNA-BINDING DOMAIN 5 160 IPR044808 GO:0003700|GO:0009873
Gso10g0062 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 5 160 - -
Gso10g0062 167 SMART rav1_2 46 110 IPR001471 GO:0003700|GO:0006355
Gso10g0062 167 SUPERFAMILY DNA-binding domain 45 106 IPR016177 GO:0003677
Gso10g0062 167 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Gso10g0062 167 PRINTS Ethylene responsive element binding protein signature 86 106 IPR001471 GO:0003700|GO:0006355
Gso10g0062 167 Gene3D AP2/ERF domain 46 106 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0062 Gso-Chr10 703145 704088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0062 9 164 AP2-EREBP Transcription Factor Family AT3G23240 54.945 1.48e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g0062 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0062 K14516 - gmx:100785936 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0054 2 663834 664914 Gso10g0062 10 703145 704088 GST
Gso3g1365 3 39576659 39577707 Gso10g0062 10 703145 704088 PCT