Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0055 ATGGCTCCGAAGAAAGGTGTGAAAGGTTCCGTTGTAGCAGCGAAGAAGAAGGTTCAGGAGAAGGTGACGAATCCTTTGTTCGAGAAGCGTCCGAAGCAGTTCGGGATCGGAGGCGCGCTGCCGCCGAAGCGGGACCTGACGCGGTTCGTGAAGTGGCCGAAGAACGTCCAAATCCAACGCAAGAAGCGCATCCTCAAGCAGAGGCTCAAGGTCCCTCCTGCACTCAACCAGTTCACCAAAACCCTAGACAAGAATCTCGCCACGAATCTATTTAAGATGCTGCTCAAGTACAGGCCGGAGGACAAGGCGGAGAAGAAGGAGCGGCTCTTGAAGAGGGCTCAGGCTGAGGCCGATGGGAAGCCTGTTGAGGCCAAGAAGCCTATTGTTGTCAAATACGGTCTCAACCATGTTACTTACCTTATTGAGCAGAACAAGGCACAACTGGTTGTGATTGCTCACGACGTGGACCCAATTGAGCTGGTGGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAAGCACGCTTGGGAACGATTGTCCACAAGAAAACTGCTTCAGTTTTGTGCTTGACAACTGTCAAGAATGAAGACAAGATGGAGTTCAGTAGAATCCTAGAAGCTATTAAGGCCAACTTCAATGACAAGTATGATGAATACAGAAAGAAGTGGGGTGGTGGAATCATGGGTTCCAAATCTCAAGCCAAGACCAGGGCCAAGGAGAAGCTCCTTGCCAAGGAAGCAGCCCAAAGAATGAACTAG 783 0.5045 MAPKKGVKGSVVAAKKKVQEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEADGKPVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMN* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0055 260 ProSitePatterns Ribosomal protein L7Ae signature. 168 185 IPR004037 GO:0042254|GO:1990904
Gso10g0055 260 PRINTS Ribosomal protein L7A/RS6 family signature 130 144 IPR018492 -
Gso10g0055 260 PRINTS Ribosomal protein L7A/RS6 family signature 149 162 IPR018492 -
Gso10g0055 260 PRINTS Ribosomal protein L7A/RS6 family signature 165 175 IPR018492 -
Gso10g0055 260 PRINTS Ribosomal protein L7A/RS6 family signature 175 189 IPR018492 -
Gso10g0055 260 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 258 - -
Gso10g0055 260 SUPERFAMILY L30e-like 90 231 IPR029064 -
Gso10g0055 260 PRINTS Ribosomal protein L7A family signature 31 48 IPR001921 -
Gso10g0055 260 PRINTS Ribosomal protein L7A family signature 48 65 IPR001921 -
Gso10g0055 260 PRINTS Ribosomal protein L7A family signature 68 87 IPR001921 -
Gso10g0055 260 PRINTS Ribosomal protein L7A family signature 92 105 IPR001921 -
Gso10g0055 260 PRINTS Ribosomal protein L7A family signature 126 146 IPR001921 -
Gso10g0055 260 PRINTS Ribosomal protein L7A family signature 187 211 IPR001921 -
Gso10g0055 260 PRINTS Ribosomal protein L7A family signature 219 239 IPR001921 -
Gso10g0055 260 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 120 208 IPR004038 -
Gso10g0055 260 Gene3D - 52 235 IPR029064 -
Gso10g0055 260 PANTHER BNAA03G47020D PROTEIN 2 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0055 Gso-Chr10 629028 631402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0055 1 260 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.385 2.07e-167 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0055 K02936 - gmx:100797399 483.796