LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso10g0049	ATGGAAACTACAAGACGGTGGTTTAGTAAGTTCAAGTCAAATGATAAAATGAAGTCTGAAAAGAACAAAGAAACTACAGGCGTGACAAAAGAAGGGTCAAGACCCCCAACAAATGAAGAAGCACCTTCAAATGTAACCAAACAGAGGGTTGAAGCTGCAAAGCAGTATATCGAAAATCATTATAAGAAGCAGATGCAAAGCCTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAACAACACAACTTGCTTCAGCATTTGGAGAAAAAGGAGAGGGAAATCATGCGCCTTCAGAGACATAAGATGGGGGCTGATGACTTTGAGCCCCTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGGGAGAAGGCCACTGGCCATGTTTATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTACGAAGAGGCCAGGTTGAACATGTCAAAGCTGAGAGAAATCTACTTGCTGAAGTTGACAGCAATTGCATTGTTAAACTTTATTGTTCCTTTCAAGATGAGGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGCCACATGAAATTATCAGATTTTGGATTATGTAAACCGCTAGACTGCAGTAACCTTCAAGAAAAGGACTTCTCTGTTGGAATGAACAGAAGTGGAGCCCTCCAAAGTGATGGGCGTCCTGTGGCTCCTAAACGAACCCAACAGGAACAACTGCAGCATTGGCAGAAAAATCGACGAATGCTTGCCTATTCTACAGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTTCTGAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGATAGTAAACTGGAGAACTACTTTAAAGTTTCCAGAAGAAGCTAAACTTTCAGCAGAGGCAAAGGATCTTATTTGTAGACTCCTATGTAATGTGGAGCAGAGGCTTGGAACCAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGACAAATTATACCAAATGAAAGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGCGGACAAGCAAACTGTACCTTCCTCAAAGGCAGGGCCGTGGAGAAAGATGCTGCCTTCTAAAGATATTAACTTCGTCGGCTACACATACAAGAATTTTGAAATCGTGAATGATCCTGAAATACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAAAGACCATCTATTAAGTCCCTATTTGATGATGAATCAGCTACGGCTGCCAATCAACCTGTCAGAGGGAGCTTCTTAAACCTCTTACCTCCTCAAATGGAAGTTCCTGAAAAAAGTGAATCACAATGA	1644	0.4124	METTRRWFSKFKSNDKMKSEKNKETTGVTKEGSRPPTNEEAPSNVTKQRVEAAKQYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQHNLLQHLEKKEREIMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSVGMNRSGALQSDGRPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRTTLKFPEEAKLSAEAKDLICRLLCNVEQRLGTKGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNDELDTQNFEKFEEADKQTVPSSKAGPWRKMLPSKDINFVGYTYKNFEIVNDPEIPGIAELKKKSTKPKRPSIKSLFDDESATAANQPVRGSFLNLLPPQMEVPEKSESQ*	548

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso10g0049	547	Gene3D	Phosphorylase Kinase; domain 1	437	447	-	-
Gso10g0049	547	PANTHER	SERINE/THREONINE-PROTEIN KINASE	1	545	-	-
Gso10g0049	547	Gene3D	Transferase(Phosphotransferase) domain 1	203	269	-	-
Gso10g0049	547	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	238	250	IPR008271	GO:0004672\|GO:0006468
Gso10g0049	547	Coils	Coil	61	112	-	-
Gso10g0049	547	Pfam	Protein kinase domain	121	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso10g0049	547	ProSiteProfiles	Protein kinase domain profile.	119	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso10g0049	547	SUPERFAMILY	Protein kinase-like (PK-like)	100	468	IPR011009	-
Gso10g0049	547	MobiDBLite	consensus disorder prediction	29	46	-	-
Gso10g0049	547	SMART	serkin_6	119	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso10g0049	Gso-Chr10	575594	588886	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso10g0049	1	545	AGC Kinase Gene Family	AT3G23310	82.299	0.0	917

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Gso10g0049		Pkinase	1e-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso10g0049	K08790		-	gmx:100795087	1112.06

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1379	19	42622092	42629341	Gso10g0049	10	575594	588886	PCT
	Gso3g1384	3	39809308	39816363	Gso10g0049	10	575594	588886	PCT

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