LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso10g0035	ATGGGGAGGACAGGGAAATGGCTCAGGAGCTTGTTGACAGGGAAGAGATCAGACAGAGAGAAAGAGAAGGAAAAGGAAAAATGTGGCACCAACATGTGTTTGTTGAATGGCATCACAAGCACAACAGAAACAGAAAATCCAACCACACCAGTTTCAACAACAACAACCACCAAGGAGAAAAGAAGGTGGAGTTTCAGGAGATCACCAGCTTCCAGGGAACTGAATCTTGCAGAATCTGGTGTCATTGCTTCTTCAGTCACAGTGCAAAATGCTGAGAATGATCAAAGGGAGCATGATCCTGATTCCAATGGGTTGTCAACAAGATGTTCTGAAGAGGCTGCAGCTATTAAAATTCAATCGGTGTTTCGGTCCTACTTGGCAAGAAAGGCACTGTATGCTCTCAGAGGACTAGTGAAGTTGCAGGCATTGGTGAGGGGTCACTTGGTGAGAAAACAGGCCAGGGAGACACTGAGATGCATTCAGGCTTTGGTCATAGCACAAGCCAGGGCTCGTGCTCAGAGGGCGCGGATGGTGTCAGAAGATCAAAACCTATCACCCTACAGAATAACCACTGAGGAAAACTTCTTCATGCTTATGCATAATGAAATGGACAGTGGTTTGGAAGAGAATGCCAAGATTGTGGAGATGGCTGTTTGTGAATCCAAAGGCAACTCAAGAGGAAGAAACAGCGCTGCGAATCGCGAGCCTTCTGATCATAGATTTTCTGCATATTACTCATCAAACGGTTCATACTCAAAGGAGGAAAAGTACAATGCATCATCACCTGCACCATCAACACTGACAGAATTGAGTCCAAGAGCATGCAATGGTCATTTTGAGGAGTGTTCATTCAGCACAGCACAAAGCAGTCCCTATTACTACTCAGAAGAAGTGTCAAGAGTGGATAATAAAATTACAAAGGCTCCATTTGCATTCCCTAAACCAGCATACACAGAACCCATGTCCTATGACTACCCTTTGTTTCCAAACTACATGGCGAACACGGAATCGTCGAGGGCCAAAGCCAGATCACAGAGTGCACCAAAGTCAAGGCCAGATTCGAACGAGAGGCAGCCAAGCCGAAGAAGAGCTTCAGTGGAAGGAAGAAATGTCCCAAGGCCAGTGAGGATGCAAAGGTCATCTTCACATGTTGGTTTCACTGCCCAAAACTACCAATATCCATGCTCAATAAAGCTTGACAGGTCCATAGTCAGTGAGTGTGGCTCTACAAGTACAGTGATCACAAACACAAACTCTAATTACTTCACATGA	1272	0.4536	MGRTGKWLRSLLTGKRSDREKEKEKEKCGTNMCLLNGITSTTETENPTTPVSTTTTTKEKRRWSFRRSPASRELNLAESGVIASSVTVQNAENDQREHDPDSNGLSTRCSEEAAAIKIQSVFRSYLARKALYALRGLVKLQALVRGHLVRKQARETLRCIQALVIAQARARAQRARMVSEDQNLSPYRITTEENFFMLMHNEMDSGLEENAKIVEMAVCESKGNSRGRNSAANREPSDHRFSAYYSSNGSYSKEEKYNASSPAPSTLTELSPRACNGHFEECSFSTAQSSPYYYSEEVSRVDNKITKAPFAFPKPAYTEPMSYDYPLFPNYMANTESSRAKARSQSAPKSRPDSNERQPSRRRASVEGRNVPRPVRMQRSSSHVGFTAQNYQYPCSIKLDRSIVSECGSTSTVITNTNSNYFT*	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso10g0035	423	ProSiteProfiles	IQ motif profile.	135	162	IPR000048	GO:0005515
	Gso10g0035	423	MobiDBLite	consensus disorder prediction	336	353	-	-
	Gso10g0035	423	MobiDBLite	consensus disorder prediction	87	108	-	-
	Gso10g0035	423	MobiDBLite	consensus disorder prediction	39	70	-	-
	Gso10g0035	423	Pfam	IQ calmodulin-binding motif	113	130	IPR000048	GO:0005515
	Gso10g0035	423	Pfam	IQ calmodulin-binding motif	138	154	IPR000048	GO:0005515
	Gso10g0035	423	MobiDBLite	consensus disorder prediction	223	242	-	-
	Gso10g0035	423	MobiDBLite	consensus disorder prediction	336	383	-	-
	Gso10g0035	423	PANTHER	IQ-DOMAIN 5-RELATED	1	411	-	-
	Gso10g0035	423	Gene3D	-	109	158	-	-
	Gso10g0035	423	MobiDBLite	consensus disorder prediction	12	27	-	-
	Gso10g0035	423	Pfam	Protein of unknown function (DUF4005)	303	368	IPR025064	-
	Gso10g0035	423	MobiDBLite	consensus disorder prediction	39	58	-	-
	Gso10g0035	423	SMART	iq_5	110	132	IPR000048	GO:0005515
	Gso10g0035	423	SMART	iq_5	133	154	IPR000048	GO:0005515
	Gso10g0035	423	MobiDBLite	consensus disorder prediction	1	27	-	-
	Gso10g0035	423	ProSiteProfiles	IQ motif profile.	111	139	IPR000048	GO:0005515
	Gso10g0035	423	PANTHER	IQ CALMODULIN-BINDING MOTIF PROTEIN	1	411	-	-
	Gso10g0035	423	MobiDBLite	consensus disorder prediction	354	369	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso10g0035	Gso-Chr10	401046	403624	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso10g0035	1	418	IQD Protein Family	AT4G14750	44.635	9.19e-86	267

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso10g0035	-		-	gmx:100807852	775.007