Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0029 ATGAATCCTAACAATGATGGTCCTATGATTCTTGTGAAGGAAGAGTTTCCCGAAGGTGTGGCTATTGCTCCACAACCATTGGAGGGGCTTCATGAGATTGGTCCTCCACCATTCCTCACAAAGACTTATGACATCGTCGATGATGTTTCCACTGATGAGATAGTTTCGTGGAGCAGAGGAAACAACAGCTTCGTTGTGTGGGATCCTCAGGCTTTTTCCATCACTCTTCTCCCCAGATACTTCAAGCACAACAACTTCTCCAGCTTTGTCAGACAACTCAACACCTATGGGTTTAGAAAGGTAGATCCGGATAAGTGGGAGTTTGCTAATGAAGGGTTTCTTAGAGGACAGAAGCATCTATTGAAGAACATAAGGAGAAAGAAGACATTAACTAATCAACAACAAGCTCTTCCAATAGACCATTGTGTTGAAGTGGGGAGGTTTGGATCATTAGATGGTGAAGTTGATGCATTGAGACGTGACAAGCAAGTTCTCATGGTGGAGCTAGTGAAGCTCAGACAACAACAGCAGAACACAAGAAACAACCTTCAATCAATGGAAAATAGGCTTAAAAGGACTCAGAAGCAGCAGCAACAAATGATGAAGTTCTTGACAAGGGCAATGCAGAACCCCAACTTCTTGCAACAATTGGTTCAACAAAGGGAATGGAGAAAGGATCTTGAGGAGGCAGCTACTTTTTCCAACAAGAGAATAAGAAGTGATGTTGAAGAATGCTCAAGTTTTGTTAAACTTGAACATGAGGAGGAGCACAATAATGACATAATATCATCAGAGCTTGAGGTTTCTGACATGGACCTTATTATTATGAACACTGAGGAGGAGGAAGAGAAATTATTAGGAGCTGAAATTGAAAGCATTAATGAGGAAGTACTCTGGGAAGAGCTTTTGAATGAGGGTACTGAAGGAGATGTACTAATAGGATTGGAAGAAGATGATGAAGATATAGTTGTGTTGGCTGAGGAACTTGGTTATTTGGCCTCAACTCCCAAATAA 1014 0.4142 MNPNNDGPMILVKEEFPEGVAIAPQPLEGLHEIGPPPFLTKTYDIVDDVSTDEIVSWSRGNNSFVVWDPQAFSITLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKNIRRKKTLTNQQQALPIDHCVEVGRFGSLDGEVDALRRDKQVLMVELVKLRQQQQNTRNNLQSMENRLKRTQKQQQQMMKFLTRAMQNPNFLQQLVQQREWRKDLEEAATFSNKRIRSDVEECSSFVKLEHEEEHNNDIISSELEVSDMDLIIMNTEEEEEKLLGAEIESINEEVLWEELLNEGTEGDVLIGLEEDDEDIVVLAEELGYLASTPK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0029 337 Coils Coil 276 296 - -
Gso10g0029 337 ProSitePatterns HSF-type DNA-binding domain signature. 77 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0029 337 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 19 327 - -
Gso10g0029 337 Pfam HSF-type DNA-binding 38 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0029 337 PRINTS Heat shock factor (HSF) domain signature 38 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0029 337 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0029 337 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0029 337 Gene3D - 31 128 IPR036388 -
Gso10g0029 337 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 327 IPR027725 -
Gso10g0029 337 SUPERFAMILY "Winged helix" DNA-binding domain 34 127 IPR036390 -
Gso10g0029 337 SMART hsfneu3 34 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g0029 337 Coils Coil 155 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0029 Gso-Chr10 334840 337173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0029 24 335 HSF AT3G22830 53.151 3.82e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso10g0029 HSF_DNA-bind 4.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0029 K09419 - gmx:100806789 640.188