Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0017 ATGGAAGCATCGCCGCCGCCGTCACCGTCGCCGTCACCACGGACCACCATCCTGGCCAAGTACCAGCTCACGCGTTTCCTCGGCCGCGGCAACTTCGCTAAGGTCTACCAGGCGCGCTCCCTCCTCGACGGCGCCACGGTAGCCGTGAAGGCCATCGACAAGTCCAAGACGGTGGACGCCGCCATGGAGCCCCGCATCGTGCGTGAGATCGACGCCATGCGCCGCCTCCACCACCACCCCAACATCCTCAAAATCCACGAGGTCCTCGCCACCAAGACCAAGATCTACCTCATCGTCGACTTCGCCGGTGGCGGCGAGCTCTTCTCCAAGCTCACCCGCCGCGGCCGCCTCCCGGAGCCCCTCGCCCGCCGCTACTTCGCGCAGCTCGTCTCCGCTCTCCGCTTCTGCCACCGCCATGGCGTCGCCCACCGAGACCTCAAGCCACAGAACCTCCTCCTCGACGCCGCCGGCAACCTCAAGGTCTCCGACTTCGGCCTCTCCGCCCTCCCGGAACACCTCCACGACGGTCTCCTCCACACCGCCTGCGGCACGCCGGCCTTCACCGCGCCAGAGATCCTCCGCCGCGTCGGCTACGACGGCTCAAAAGCCGACGCCTGGTCCTGCGGCGTCATCCTCTACAACCTCCTCGCCGGCCACCTCCCCTTCGACGACTCCAACATCCCCGCCATGTGCCGGCGCATCTCCCGCCGCGACTACCAGTTCCCGGCATGGATCTCGAAATCCGCACGGAGCCTCATTTACCAATTGCTCGACCCAAACCCTATAACACGAATTTCGTTAGAAAAAGTTTGCGATAACAATAAATGGTTCAAGAATAATTCAATGGTGGAAGTGAAAGAGAGTGTTTGGGAGTCTGATTTGTATAACAAGTGCTGCGACGGTGGTTATAAATCGGGGATGAACGCATTTGACATAATATCGATGTCGTCGGGGTTGGATTTGCGAGGGTTGTTCGAAACGACGTCGGAGAAGGGGAGAAGGAGGGAGAAGAGGTTCACTTCGGATAAAAAAGTGGAAACAGTGGAAGCGAAGGTGAAGGAAGTTGGAGAGAAATTAGGGTTTAGGATTGAGATAGGGAAGAACGGTGCTATTGGGTTGGGAAAGGGGAAGGTGGGTGTTGTGGTTGAGGTGTTTGAGATTGTGGCTGACTTGTTGCTTGTGGCGGTCAAAGTGGTGGATGGTGGGCTGGAGTTTGAGGAGCTTCATTGGGATGATTGGAGAATTGGCCTTCAAGATCTTGTTCTCTCATGGCATGATGTTGGATTGGAGCTTTAG 1296 0.5826 MEASPPPSPSPSPRTTILAKYQLTRFLGRGNFAKVYQARSLLDGATVAVKAIDKSKTVDAAMEPRIVREIDAMRRLHHHPNILKIHEVLATKTKIYLIVDFAGGGELFSKLTRRGRLPEPLARRYFAQLVSALRFCHRHGVAHRDLKPQNLLLDAAGNLKVSDFGLSALPEHLHDGLLHTACGTPAFTAPEILRRVGYDGSKADAWSCGVILYNLLAGHLPFDDSNIPAMCRRISRRDYQFPAWISKSARSLIYQLLDPNPITRISLEKVCDNNKWFKNNSMVEVKESVWESDLYNKCCDGGYKSGMNAFDIISMSSGLDLRGLFETTSEKGRRREKRFTSDKKVETVEAKVKEVGEKLGFRIEIGKNGAIGLGKGKVGVVVEVFEIVADLLLVAVKVVDGGLEFEELHWDDWRIGLQDLVLSWHDVGLEL* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0017 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Gso10g0017 431 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 13 427 - -
Gso10g0017 431 SMART serkin_6 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0017 431 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Gso10g0017 431 Pfam NAF domain 307 364 IPR004041 GO:0007165
Gso10g0017 431 Pfam Protein kinase domain 21 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0017 431 Gene3D Kinase associated domain 1, KA1 302 422 - -
Gso10g0017 431 Gene3D Transferase(Phosphotransferase) domain 1 107 299 - -
Gso10g0017 431 Gene3D Phosphorylase Kinase; domain 1 23 106 - -
Gso10g0017 431 PANTHER SERINE/THREONINE KINASE 13 427 - -
Gso10g0017 431 ProSiteProfiles Protein kinase domain profile. 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0017 431 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Gso10g0017 431 CDD CIPK_C 308 418 - -
Gso10g0017 431 SUPERFAMILY Protein kinase-like (PK-like) 19 272 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0017 Gso-Chr10 181337 182933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0017 1 426 Miscellaneous Gene Families AT3G23000 57.666 3.24e-169 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso10g0017 Pkinase 2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0017 K12761 - gmx:100305372 817.764