Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02309 ATGGGATCGTGCCTCTCGGTGTCGGGGGCATCGGCCTCCGTAGATGCTTTTGATGAATCATCTTCCAATTCCAGTTCCAGAACTGCCTCTGATTATAACATGGAAATGCGGCTCCACAGAGTTCCTGGCAGATTATTCTTGAACTGTTCGTCCCAGGTTGCTTCCTTGTTCTGTAAGCAAGGTCGCAAAGGGATCAACCAGGATGCCATGCTTCTCTGGGATAATTTCTCTTCAAACAAGGACACCGTTTTCTGTGGTGTTTTTGATGGCCATGGACCTCATGGCCATATGGTTGCAAAGAAGCTCAGGGATTCCTTCCCTCTCAAGCTTATTGCTCAATGGAATTTGCTTCATCCTAACAACAACAGCAGCAGCAACAACAACAGCGATACACCTTGTGCGGTTGCCCCGGGTAACATTGGTACGCTCAGAGACTCCTTTGTGAAGGCTTGCAAGGTGATGGACAGAGAGCTGAAAGTGCAGCATCAGATAGATTGCTCGTGTAGCGGGAGCACGGGTTTGACGTTGCTGAAGCAGGGTCAGGACCTTGTTATTGCGAATGTGGGTGACTCCAGAGCAGTATTGGCCACCCAAGATCGTAGCAATGGTTCTCTTGTTGCTGTCCAGTTGAGCACTGACCACAAGCCACATCTCCCAAGGGAAGCAGAGAGGATAAGGATTTGTAAAGGAAGGGTCTTTTCCATTAAGAACGAATCAGGGATTCCTCGAGTATGGCTCCCCAACATTGATTCCCCTGGCCTTGCCATGTCACGTGCTTTTGGAGATTTTTGTCTCAAGGACTTTGGAGTCATCTCTGTTCCTGATTTCTCATATCACCGCCTCACTCAAAGGGATCAGTTTGTTGTCTTAGCCACAGATGGGGTATGGGATGTTTTATCCAACGAAGAAGCTGTGGCCATTATCTCTTCTGCTCCTCGCTCTTCAGCGGCTCGAATGTTGGTTGAGGCGGCTATTCATGCATGGAAAACCAAGCTTCCCCTTACAAAGGTTGATGATTGCTCTGTCGTTTGCCTCTTCTTTCATTCAGACTCAGACTCAGACTCACTTAGACTCGAACCTCAACAAAACCACCAATAG 1098 0.4827 MGSCLSVSGASASVDAFDESSSNSSSRTASDYNMEMRLHRVPGRLFLNCSSQVASLFCKQGRKGINQDAMLLWDNFSSNKDTVFCGVFDGHGPHGHMVAKKLRDSFPLKLIAQWNLLHPNNNSSSNNNSDTPCAVAPGNIGTLRDSFVKACKVMDRELKVQHQIDCSCSGSTGLTLLKQGQDLVIANVGDSRAVLATQDRSNGSLVAVQLSTDHKPHLPREAERIRICKGRVFSIKNESGIPRVWLPNIDSPGLAMSRAFGDFCLKDFGVISVPDFSYHRLTQRDQFVVLATDGVWDVLSNEEAVAIISSAPRSSAARMLVEAAIHAWKTKLPLTKVDDCSVVCLFFHSDSDSDSLRLEPQQNHQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02309 365 CDD PP2Cc 52 347 IPR001932 -
Gma20g02309 365 PANTHER ALPHABET, ISOFORM E-RELATED 1 354 - -
Gma20g02309 365 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 1 354 - -
Gma20g02309 365 SUPERFAMILY PP2C-like 50 348 IPR036457 -
Gma20g02309 365 Gene3D - 47 350 IPR036457 -
Gma20g02309 365 ProSiteProfiles PPM-type phosphatase domain profile. 53 347 IPR001932 -
Gma20g02309 365 Pfam Protein phosphatase 2C 60 321 IPR001932 -
Gma20g02309 365 SMART PP2C_4 40 345 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02309 Gma-Chr20 50169897 50171637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02309 38 364 PP2C-type Phosphatase Gene Family AT1G16220 53.468 7.41e-131 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02309 - - gmx:100816114 699.508